Strain Fitness in Pseudomonas putida KT2440 around PP_2176

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
2,480,507	+		PP_2174	0.86	+0.5
2,480,507	+		PP_2174	0.86	-0.0
2,480,507	+		PP_2174	0.86	-1.1
2,480,507	+				-0.3
2,480,508	-		PP_2174	0.87	-0.4
2,480,508	-		PP_2174	0.87	+0.3
2,480,508	-		PP_2174	0.87	-0.4
2,480,508	-		PP_2174	0.87	+1.2
2,480,508	-		PP_2174	0.87	-0.4
2,480,514	+		PP_2174	0.88	-0.5
2,480,514	+		PP_2174	0.88	-0.2
2,480,515	-		PP_2174	0.88	-0.5
2,480,547	+				-0.1
2,480,547	+				-0.3
2,480,548	-				-1.3
2,480,694	+				+0.5
2,480,694	+				-0.5
2,480,694	+				-1.6
2,480,695	-				+0.1
2,480,695	-				-0.2
2,480,755	-		PP_2175	0.16	+0.5
2,480,989	-		PP_2175	0.49	-1.1
2,481,030	+		PP_2175	0.55	+0.5
2,481,030	+		PP_2175	0.55	+0.2
2,481,031	-		PP_2175	0.55	-0.7
2,481,199	+		PP_2175	0.79	+0.7
2,481,199	+		PP_2175	0.79	-0.1
2,481,199	+		PP_2175	0.79	-1.6
2,481,199	+		PP_2175	0.79	+0.4
2,481,200	-		PP_2175	0.79	-0.2
2,481,302	-				-0.6
2,481,339	-				+1.1
2,481,363	+				-1.0
2,481,378	+				+0.5
2,481,387	+				+0.4
2,481,424	+				+0.5
2,481,443	-				-2.4
2,481,447	+				+1.1
2,481,447	+				+0.6
2,481,447	+				-0.2
2,481,448	-				+1.0
2,481,448	-				+0.5
2,481,451	+				-0.1
2,481,491	+				-0.3
2,481,491	+				+1.0
2,481,531	+				+0.3
2,481,532	-				+1.3
2,481,532	-				-1.9
2,481,532	-				-0.7
2,481,541	+		PP_2176	0.10	+0.1
2,481,541	+		PP_2176	0.10	-0.0
2,481,628	+		PP_2176	0.20	+0.5
2,481,628	+		PP_2176	0.20	+0.3
2,481,628	+		PP_2176	0.20	-0.1
2,481,897	+		PP_2176	0.48	+0.4
2,481,957	-		PP_2176	0.55	-0.3
2,481,962	+		PP_2176	0.55	-1.1
2,481,962	+		PP_2176	0.55	+0.8
2,482,209	-		PP_2176	0.82	-0.2
2,482,209	-		PP_2176	0.82	-0.4
2,482,298	+				+0.5
2,482,298	+				+0.8
2,482,298	+				+1.1
2,482,299	-				-0.6
2,482,521	+				+0.2
2,482,592	-				-1.5
2,482,752	-		PP_2177	0.36	-0.5
2,482,758	-		PP_2177	0.37	+0.3
2,482,758	-		PP_2177	0.37	-0.3
2,482,758	-		PP_2177	0.37	-0.6
2,482,758	-		PP_2177	0.37	-2.2
2,482,821	-		PP_2177	0.48	+0.6
2,482,925	+		PP_2177	0.67	+0.1
2,482,926	-		PP_2177	0.67	-0.2
2,482,926	-		PP_2177	0.67	+1.0
2,483,058	-				+0.3
2,483,128	+				+0.5
2,483,129	-				+0.0
2,483,205	-				+0.9
2,483,243	+				-0.8