Strain Fitness in Pseudomonas putida KT2440 around PP_2024

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
2,295,478	+				+0.4
2,295,570	-				+0.9
2,295,602	-		PP_5496	0.14	+0.6
2,295,686	+		PP_5496	0.61	+1.0
2,295,686	+		PP_5496	0.61	-0.5
2,295,687	-		PP_5496	0.62	-0.3
2,295,699	-		PP_5496	0.68	+0.8
2,296,057	-		PP_2023	0.28	+0.5
2,296,158	+				+2.4
2,296,158	+		PP_2023	0.45	+1.1
2,296,158	+		PP_2023	0.45	+0.3
2,296,158	+		PP_2023	0.45	+0.1
2,296,242	-		PP_2023	0.59	-0.2
2,296,562	-				-0.4
2,296,864	+		PP_2024	0.11	-1.0
2,296,864	+		PP_2024	0.11	+0.9
2,296,864	+		PP_2024	0.11	-0.6
2,296,865	-		PP_2024	0.11	-1.2
2,296,865	-		PP_2024	0.11	-0.6
2,296,904	+		PP_2024	0.12	-0.6
2,296,904	+		PP_2024	0.12	-0.5
2,296,904	+		PP_2024	0.12	-1.9
2,296,905	-		PP_2024	0.12	-0.6
2,297,599	+		PP_2024	0.31	-0.0
2,297,791	+		PP_2024	0.36	-1.1
2,297,792	-		PP_2024	0.36	+0.4
2,297,795	-		PP_2024	0.36	-1.9
2,298,077	-		PP_2024	0.44	-0.9
2,298,662	+		PP_2024	0.60	-0.6
2,298,788	+		PP_2024	0.63	+0.6
2,298,988	-		PP_2024	0.69	-0.3
2,299,447	+		PP_2024	0.81	-1.1
2,299,447	+		PP_2024	0.81	+0.5
2,299,683	-		PP_2024	0.88	-0.6
2,299,727	+		PP_2024	0.89	-0.6
2,299,727	+		PP_2024	0.89	-1.6
2,299,728	-		PP_2024	0.89	+0.8
2,299,728	-		PP_2024	0.89	-0.6
2,300,630	-		PP_2025	0.41	-0.4
2,300,689	+		PP_2025	0.46	-1.5
2,300,689	+		PP_2025	0.46	-0.7
2,300,696	+		PP_2025	0.47	-0.6
2,300,885	-		PP_2025	0.62	-2.6