Strain Fitness in Pseudomonas putida KT2440 around PP_1768

Experiment: Formaldehyde 0.03125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1767 and PP_1768 are separated by 147 nucleotidesPP_1768 and PP_1769 overlap by 8 nucleotides PP_1767: PP_1767 - DNA gyrase, subunit A, at 1,971,072 to 1,973,843 _1767 PP_1768: PP_1768 - phosphoserine aminotransferase, at 1,973,991 to 1,975,076 _1768 PP_1769: PP_1769 - chorismate mutase/Prephenate dehydratase, at 1,975,069 to 1,976,172 _1769 Position (kb) 1973 1974 1975 1976Strain fitness (log2 ratio) -2 -1 0 1at 1973.785 kb on + strandat 1973.841 kb on + strandat 1973.841 kb on + strandat 1973.841 kb on + strandat 1973.841 kb on + strandat 1973.841 kb on + strandat 1973.841 kb on + strandat 1973.845 kb on + strandat 1973.851 kb on + strandat 1973.893 kb on + strandat 1973.894 kb on - strandat 1973.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol%
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1,973,785 + +0.2
1,973,841 + -2.4
1,973,841 + -1.0
1,973,841 + -2.2
1,973,841 + -0.2
1,973,841 + -1.2
1,973,841 + -1.2
1,973,845 + -1.0
1,973,851 + +0.6
1,973,893 + -1.9
1,973,894 - -0.6
1,973,955 + +0.5

Or see this region's nucleotide sequence