Strain Fitness in Pseudomonas putida KT2440 around PP_1707

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
1,905,873	+		PP_1705	0.83	+1.7
1,905,949	+		PP_1705	0.86	+0.1
1,906,048	-				+0.1
1,906,129	-				-0.6
1,906,129	-				-0.1
1,906,129	-				-1.1
1,906,422	-		PP_1706	0.34	-0.1
1,906,448	+		PP_1706	0.41	-0.1
1,906,449	-		PP_1706	0.42	-0.0
1,906,449	-		PP_1706	0.42	-0.1
1,906,486	+		PP_1706	0.52	+0.8
1,906,486	+		PP_1706	0.52	-0.4
1,906,487	-		PP_1706	0.52	+0.1
1,906,547	+		PP_1706	0.69	-0.9
1,906,547	+		PP_1706	0.69	-0.7
1,906,729	+				-0.3
1,906,729	+				-0.3
1,906,730	-				-0.3
1,906,730	-				+0.3
1,906,789	+				+0.8
1,906,789	+				+0.0
1,906,789	+				-1.7
1,906,790	-				+0.1
1,906,793	+				-0.1
1,906,794	-				-3.5
1,906,875	+				+0.2
1,906,875	+				+1.1
1,906,875	+				+0.3
1,906,876	-				+0.8
1,906,908	+		PP_1707	0.13	+1.2
1,906,908	+		PP_1707	0.13	+0.1
1,907,022	+		PP_1707	0.25	-0.9
1,907,022	+		PP_1707	0.25	-0.5
1,907,022	+		PP_1707	0.25	+0.7
1,907,023	-				-0.9
1,907,023	-		PP_1707	0.25	+0.6
1,907,053	+		PP_1707	0.28	+1.0
1,907,199	+		PP_1707	0.43	-0.5
1,907,199	+		PP_1707	0.43	-0.2
1,907,209	+		PP_1707	0.44	+1.0
1,907,485	+		PP_1707	0.73	+0.5
1,907,486	-		PP_1707	0.73	+0.4
1,907,497	-		PP_1707	0.75	-0.3
1,907,626	+		PP_1707	0.88	+0.2
1,907,626	+		PP_1707	0.88	-0.2
1,907,626	+		PP_1707	0.88	-1.6
1,907,626	+		PP_1707	0.88	-2.1
1,907,627	-		PP_1707	0.88	+0.6
1,907,627	-		PP_1707	0.88	+1.0
1,907,627	-		PP_1707	0.88	-0.2
1,907,650	+				-0.5
1,907,653	+				-0.4
1,907,753	+				-1.2
1,907,753	+				-0.0
1,907,753	+				+0.1
1,907,753	+				+0.9
1,907,753	+				+0.6
1,907,814	+				+0.2
1,907,814	+				+0.6
1,907,815	-				+0.8
1,907,815	-				-0.7
1,907,841	+		PP_1708	0.10	+0.6
1,907,842	-		PP_1708	0.10	+0.2
1,907,842	-		PP_1708	0.10	-0.2
1,907,845	+		PP_1708	0.11	-2.5
1,907,845	+		PP_1708	0.11	+0.2
1,907,846	-		PP_1708	0.11	+0.4
1,907,846	-		PP_1708	0.11	+0.7
1,907,989	+		PP_1708	0.30	-0.2
1,908,052	+		PP_1708	0.38	+0.3
1,908,053	-		PP_1708	0.38	+0.7
1,908,138	-		PP_1708	0.49	-1.5
1,908,138	-		PP_1708	0.49	+0.7
1,908,138	-		PP_1708	0.49	+0.5
1,908,168	+		PP_1708	0.53	+0.1
1,908,168	+		PP_1708	0.53	+0.0
1,908,168	+		PP_1708	0.53	-0.3
1,908,168	+		PP_1708	0.53	+2.0
1,908,169	-		PP_1708	0.53	-1.0
1,908,169	-		PP_1708	0.53	+0.4
1,908,169	-		PP_1708	0.53	-0.4
1,908,373	-		PP_1708	0.80	+0.8
1,908,396	+		PP_1708	0.83	+0.4