Strain Fitness in Pseudomonas putida KT2440 around PP_1616

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
1,811,535	-				+0.4
1,811,627	-		PP_1615	0.12	-2.4
1,811,699	+		PP_1615	0.20	-1.6
1,811,699	+		PP_1615	0.20	-2.4
1,811,699	+		PP_1615	0.20	-1.5
1,811,700	-		PP_1615	0.20	-1.7
1,811,700	-		PP_1615	0.20	-3.6
1,811,700	-		PP_1615	0.20	-0.3
1,811,700	-		PP_1615	0.20	-4.9
1,811,702	+		PP_1615	0.20	-1.2
1,811,703	-		PP_1615	0.20	-2.8
1,811,778	+		PP_1615	0.29	-2.5
1,811,779	-		PP_1615	0.29	-2.7
1,811,779	-		PP_1615	0.29	-2.8
1,811,779	-		PP_1615	0.29	-1.7
1,811,819	-		PP_1615	0.33	-1.9
1,811,891	+		PP_1615	0.41	-1.1
1,811,892	-		PP_1615	0.41	-3.1
1,811,903	+		PP_1615	0.43	-2.0
1,811,924	+		PP_1615	0.45	-2.8
1,811,924	+		PP_1615	0.45	-1.3
1,811,924	+		PP_1615	0.45	-2.1
1,811,924	+		PP_1615	0.45	-0.8
1,811,925	-		PP_1615	0.45	-2.1
1,811,925	-		PP_1615	0.45	-2.3
1,812,063	-		PP_1615	0.60	-2.2
1,812,461	+				-2.9
1,812,461	+				-4.3
1,812,660	+		PP_1616	0.12	-3.6
1,812,661	-		PP_1616	0.12	+0.3
1,812,661	-		PP_1616	0.12	-2.3
1,812,661	-		PP_1616	0.12	-4.0
1,812,662	+		PP_1616	0.13	-3.2
1,812,662	+		PP_1616	0.13	-2.3
1,812,662	+		PP_1616	0.13	-3.0
1,812,663	-		PP_1616	0.13	-0.5
1,812,690	-		PP_1616	0.15	-1.7
1,812,690	-		PP_1616	0.15	-1.7
1,812,690	-		PP_1616	0.15	-3.4
1,812,790	-		PP_1616	0.24	-3.4
1,812,790	-		PP_1616	0.24	-2.0
1,812,906	+		PP_1616	0.34	-2.9
1,812,930	+		PP_1616	0.37	-2.8
1,812,930	+		PP_1616	0.37	-3.0
1,812,930	+		PP_1616	0.37	-2.5
1,812,931	-		PP_1616	0.37	-2.6
1,812,931	-		PP_1616	0.37	-2.9
1,812,957	+		PP_1616	0.39	-3.4
1,813,091	+		PP_1616	0.51	-3.5
1,813,091	+		PP_1616	0.51	-1.7
1,813,092	-		PP_1616	0.51	-2.5
1,813,166	+		PP_1616	0.58	-2.6
1,813,248	+		PP_1616	0.65	-0.1
1,813,248	+		PP_1616	0.65	-1.1
1,813,249	-		PP_1616	0.65	-3.3
1,813,249	-		PP_1616	0.65	-2.5
1,813,504	-		PP_1616	0.88	-3.4
1,813,504	-		PP_1616	0.88	-2.2
1,813,504	-		PP_1616	0.88	-2.8
1,813,619	+				-2.7
1,813,657	+				-2.0
1,813,733	-		PP_1617	0.10	-0.8
1,813,749	-		PP_1617	0.12	-3.1
1,813,793	+		PP_1617	0.17	-1.4
1,813,794	-		PP_1617	0.17	-2.1
1,813,968	-		PP_1617	0.38	-2.3
1,813,968	-		PP_1617	0.38	-2.7
1,813,968	-		PP_1617	0.38	-1.7
1,814,018	+		PP_1617	0.44	-1.7
1,814,018	+		PP_1617	0.44	-2.3
1,814,019	-		PP_1617	0.44	-3.6
1,814,019	-		PP_1617	0.44	-3.3
1,814,144	+		PP_1617	0.58	-1.7
1,814,407	+		PP_1617	0.89	-1.3
1,814,407	+		PP_1617	0.89	-1.7
1,814,408	-		PP_1617	0.89	-2.3
1,814,428	+				-2.6
1,814,428	+				-3.9
1,814,428	+				-3.3
1,814,428	+				-1.4
1,814,428	+				-1.6
1,814,428	+				-4.3
1,814,428	+				+1.5
1,814,428	+				-1.6
1,814,428	+				-1.8
1,814,428	+				-2.9
1,814,429	-				-1.6
1,814,429	-				-1.7
1,814,429	-				-1.7
1,814,429	-				-2.2
1,814,429	-				-2.4
1,814,429	-				-2.5
1,814,429	-				-1.7
1,814,429	-				-3.7
1,814,432	+				-1.7
1,814,432	+				-2.5
1,814,432	+				-4.0
1,814,432	+				-2.4
1,814,432	+				-3.2
1,814,432	+				-3.8
1,814,432	+				-3.0
1,814,433	-				-2.4
1,814,433	-				-1.5
1,814,435	+				-2.6
1,814,436	-				-3.9
1,814,436	-				-4.3
1,814,436	-				-1.5
1,814,498	+				-0.5