Strain Fitness in Pseudomonas putida KT2440 around PP_1520

Experiment: Formaldehyde 0.03125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1518 and PP_1519 are separated by 33 nucleotidesPP_1519 and PP_1520 are separated by 76 nucleotidesPP_1520 and PP_1521 are separated by 69 nucleotidesPP_1521 and PP_1522 are separated by 23 nucleotidesPP_1522 and PP_1523 are separated by 122 nucleotidesPP_1523 and PP_1524 are separated by 17 nucleotides PP_1518: PP_1518 - conserved exported protein of unknown function, at 1,724,482 to 1,725,168 _1518 PP_1519: PP_1519 - putative Lipoprotein, at 1,725,202 to 1,725,600 _1519 PP_1520: PP_1520 - glycerol-3-phosphate acyltransferase, at 1,725,677 to 1,728,163 _1520 PP_1521: PP_1521 - conserved protein of unknown function, at 1,728,233 to 1,728,373 _1521 PP_1522: PP_1522 - major cold shock protein, at 1,728,397 to 1,728,606 _1522 PP_1523: PP_1523 - conserved protein of unknown function, at 1,728,729 to 1,729,106 _1523 PP_1524: PP_1524 - 23S rRNA m1G745 methyltransferase, at 1,729,124 to 1,729,936 _1524 Position (kb) 1725 1726 1727 1728 1729Strain fitness (log2 ratio) -2 -1 0 1 2at 1724.760 kb on - strand, within PP_1518at 1725.194 kb on + strandat 1725.195 kb on - strandat 1725.195 kb on - strandat 1725.195 kb on - strandat 1725.230 kb on - strandat 1725.320 kb on - strand, within PP_1519at 1725.320 kb on - strand, within PP_1519at 1725.320 kb on - strand, within PP_1519at 1725.320 kb on - strand, within PP_1519at 1725.359 kb on + strand, within PP_1519at 1725.359 kb on + strandat 1725.359 kb on + strand, within PP_1519at 1725.359 kb on + strand, within PP_1519at 1725.359 kb on + strand, within PP_1519at 1725.360 kb on - strand, within PP_1519at 1725.360 kb on - strand, within PP_1519at 1725.360 kb on - strand, within PP_1519at 1725.360 kb on - strand, within PP_1519at 1725.504 kb on - strand, within PP_1519at 1725.504 kb on - strand, within PP_1519at 1725.755 kb on + strandat 1725.756 kb on - strandat 1726.011 kb on + strand, within PP_1520at 1726.011 kb on + strand, within PP_1520at 1726.012 kb on - strand, within PP_1520at 1726.096 kb on - strand, within PP_1520at 1726.230 kb on + strand, within PP_1520at 1726.231 kb on - strand, within PP_1520at 1726.231 kb on - strand, within PP_1520at 1726.231 kb on - strand, within PP_1520at 1726.231 kb on - strand, within PP_1520at 1726.326 kb on + strandat 1726.326 kb on + strand, within PP_1520at 1726.327 kb on - strand, within PP_1520at 1726.329 kb on + strand, within PP_1520at 1726.330 kb on - strand, within PP_1520at 1726.330 kb on - strand, within PP_1520at 1726.498 kb on - strand, within PP_1520at 1726.666 kb on - strand, within PP_1520at 1726.848 kb on + strand, within PP_1520at 1726.848 kb on + strand, within PP_1520at 1726.849 kb on - strand, within PP_1520at 1726.853 kb on - strand, within PP_1520at 1726.884 kb on + strand, within PP_1520at 1726.884 kb on + strand, within PP_1520at 1726.939 kb on + strand, within PP_1520at 1726.939 kb on + strand, within PP_1520at 1727.007 kb on + strand, within PP_1520at 1727.031 kb on + strand, within PP_1520at 1727.031 kb on + strand, within PP_1520at 1727.032 kb on - strand, within PP_1520at 1727.046 kb on + strand, within PP_1520at 1727.047 kb on - strand, within PP_1520at 1727.068 kb on - strand, within PP_1520at 1727.202 kb on + strand, within PP_1520at 1727.218 kb on - strand, within PP_1520at 1727.247 kb on + strand, within PP_1520at 1727.247 kb on + strand, within PP_1520at 1727.247 kb on + strand, within PP_1520at 1727.248 kb on - strand, within PP_1520at 1727.314 kb on - strand, within PP_1520at 1727.365 kb on + strand, within PP_1520at 1727.367 kb on + strand, within PP_1520at 1727.367 kb on + strand, within PP_1520at 1727.367 kb on + strand, within PP_1520at 1727.367 kb on + strand, within PP_1520at 1727.367 kb on + strand, within PP_1520at 1727.368 kb on - strand, within PP_1520at 1727.368 kb on - strand, within PP_1520at 1727.368 kb on - strand, within PP_1520at 1727.368 kb on - strand, within PP_1520at 1727.368 kb on - strand, within PP_1520at 1727.368 kb on - strand, within PP_1520at 1727.368 kb on - strand, within PP_1520at 1727.368 kb on - strand, within PP_1520at 1727.374 kb on - strand, within PP_1520at 1727.374 kb on - strand, within PP_1520at 1727.654 kb on + strand, within PP_1520at 1727.655 kb on - strand, within PP_1520at 1727.908 kb on - strand, within PP_1520at 1728.033 kb on + strandat 1728.034 kb on - strandat 1728.108 kb on + strandat 1728.109 kb on - strandat 1728.109 kb on - strandat 1728.199 kb on - strandat 1728.199 kb on - strandat 1728.210 kb on + strandat 1728.220 kb on + strandat 1728.228 kb on + strandat 1728.288 kb on + strand, within PP_1521at 1728.288 kb on + strand, within PP_1521at 1728.289 kb on - strand, within PP_1521at 1728.289 kb on - strand, within PP_1521at 1728.289 kb on - strand, within PP_1521at 1728.291 kb on - strand, within PP_1521at 1728.376 kb on + strandat 1728.377 kb on - strandat 1728.390 kb on - strandat 1728.390 kb on - strandat 1728.422 kb on + strand, within PP_1522at 1728.423 kb on - strand, within PP_1522at 1728.423 kb on - strand, within PP_1522at 1728.423 kb on - strand, within PP_1522at 1728.482 kb on + strand, within PP_1522at 1728.483 kb on - strandat 1728.483 kb on - strand, within PP_1522at 1728.483 kb on - strand, within PP_1522at 1728.523 kb on - strand, within PP_1522at 1728.551 kb on - strand, within PP_1522at 1728.551 kb on - strand, within PP_1522at 1728.593 kb on + strandat 1728.594 kb on - strandat 1728.594 kb on - strandat 1728.594 kb on - strandat 1728.625 kb on + strandat 1728.626 kb on - strandat 1728.737 kb on + strandat 1728.737 kb on + strandat 1728.737 kb on + strandat 1728.738 kb on - strandat 1728.738 kb on - strandat 1728.738 kb on - strandat 1728.738 kb on - strandat 1728.738 kb on - strandat 1728.738 kb on - strandat 1728.738 kb on - strandat 1728.916 kb on + strand, within PP_1523at 1728.916 kb on + strand, within PP_1523at 1728.936 kb on + strand, within PP_1523at 1728.989 kb on + strand, within PP_1523at 1728.990 kb on - strand, within PP_1523at 1728.990 kb on - strand, within PP_1523at 1729.082 kb on - strandat 1729.082 kb on - strandat 1729.082 kb on - strandat 1729.107 kb on - strandat 1729.144 kb on - strandat 1729.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol%
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1,724,760 - PP_1518 0.40 +1.0
1,725,194 + +0.7
1,725,195 - -1.0
1,725,195 - +0.7
1,725,195 - -0.8
1,725,230 - -0.6
1,725,320 - PP_1519 0.30 -0.6
1,725,320 - PP_1519 0.30 -0.7
1,725,320 - PP_1519 0.30 +1.7
1,725,320 - PP_1519 0.30 +1.2
1,725,359 + PP_1519 0.39 +0.8
1,725,359 + +0.5
1,725,359 + PP_1519 0.39 +0.7
1,725,359 + PP_1519 0.39 +0.6
1,725,359 + PP_1519 0.39 -0.7
1,725,360 - PP_1519 0.40 +0.5
1,725,360 - PP_1519 0.40 +0.1
1,725,360 - PP_1519 0.40 +0.1
1,725,360 - PP_1519 0.40 +1.6
1,725,504 - PP_1519 0.76 +0.4
1,725,504 - PP_1519 0.76 +0.4
1,725,755 + +0.3
1,725,756 - +1.0
1,726,011 + PP_1520 0.13 -0.1
1,726,011 + PP_1520 0.13 -0.2
1,726,012 - PP_1520 0.13 -0.4
1,726,096 - PP_1520 0.17 +1.4
1,726,230 + PP_1520 0.22 +0.8
1,726,231 - PP_1520 0.22 -0.6
1,726,231 - PP_1520 0.22 -0.7
1,726,231 - PP_1520 0.22 +0.6
1,726,231 - PP_1520 0.22 -0.4
1,726,326 + +2.5
1,726,326 + PP_1520 0.26 -0.9
1,726,327 - PP_1520 0.26 +0.4
1,726,329 + PP_1520 0.26 -1.2
1,726,330 - PP_1520 0.26 +1.4
1,726,330 - PP_1520 0.26 -1.1
1,726,498 - PP_1520 0.33 -0.5
1,726,666 - PP_1520 0.40 +0.7
1,726,848 + PP_1520 0.47 -0.3
1,726,848 + PP_1520 0.47 +0.3
1,726,849 - PP_1520 0.47 +0.3
1,726,853 - PP_1520 0.47 +0.6
1,726,884 + PP_1520 0.49 +1.1
1,726,884 + PP_1520 0.49 +1.3
1,726,939 + PP_1520 0.51 +0.3
1,726,939 + PP_1520 0.51 -0.6
1,727,007 + PP_1520 0.53 -0.2
1,727,031 + PP_1520 0.54 -1.2
1,727,031 + PP_1520 0.54 +0.6
1,727,032 - PP_1520 0.54 +0.5
1,727,046 + PP_1520 0.55 -1.0
1,727,047 - PP_1520 0.55 -0.5
1,727,068 - PP_1520 0.56 +0.5
1,727,202 + PP_1520 0.61 +0.3
1,727,218 - PP_1520 0.62 +1.0
1,727,247 + PP_1520 0.63 +0.3
1,727,247 + PP_1520 0.63 -0.2
1,727,247 + PP_1520 0.63 -0.6
1,727,248 - PP_1520 0.63 -0.5
1,727,314 - PP_1520 0.66 -0.1
1,727,365 + PP_1520 0.68 +0.6
1,727,367 + PP_1520 0.68 +0.6
1,727,367 + PP_1520 0.68 +0.3
1,727,367 + PP_1520 0.68 -1.3
1,727,367 + PP_1520 0.68 -0.2
1,727,367 + PP_1520 0.68 +0.4
1,727,368 - PP_1520 0.68 +1.0
1,727,368 - PP_1520 0.68 -0.5
1,727,368 - PP_1520 0.68 +0.8
1,727,368 - PP_1520 0.68 +0.5
1,727,368 - PP_1520 0.68 -0.8
1,727,368 - PP_1520 0.68 -0.3
1,727,368 - PP_1520 0.68 -0.3
1,727,368 - PP_1520 0.68 -0.5
1,727,374 - PP_1520 0.68 +1.0
1,727,374 - PP_1520 0.68 +0.5
1,727,654 + PP_1520 0.79 +0.7
1,727,655 - PP_1520 0.80 -0.3
1,727,908 - PP_1520 0.90 -0.6
1,728,033 + +0.4
1,728,034 - +0.4
1,728,108 + -0.1
1,728,109 - +0.3
1,728,109 - +0.6
1,728,199 - +0.2
1,728,199 - -0.6
1,728,210 + +1.2
1,728,220 + +0.6
1,728,228 + +0.4
1,728,288 + PP_1521 0.39 +1.0
1,728,288 + PP_1521 0.39 +0.7
1,728,289 - PP_1521 0.40 +0.5
1,728,289 - PP_1521 0.40 -0.5
1,728,289 - PP_1521 0.40 +0.2
1,728,291 - PP_1521 0.41 +1.3
1,728,376 + -0.8
1,728,377 - +0.0
1,728,390 - -0.4
1,728,390 - +1.9
1,728,422 + PP_1522 0.12 +0.4
1,728,423 - PP_1522 0.12 -0.5
1,728,423 - PP_1522 0.12 -0.5
1,728,423 - PP_1522 0.12 +1.3
1,728,482 + PP_1522 0.40 -1.8
1,728,483 - +1.1
1,728,483 - PP_1522 0.41 +0.2
1,728,483 - PP_1522 0.41 -0.6
1,728,523 - PP_1522 0.60 -0.2
1,728,551 - PP_1522 0.73 -1.3
1,728,551 - PP_1522 0.73 -0.0
1,728,593 + +1.0
1,728,594 - +0.5
1,728,594 - +0.2
1,728,594 - -0.8
1,728,625 + +0.2
1,728,626 - +1.3
1,728,737 + +0.7
1,728,737 + +1.0
1,728,737 + +0.0
1,728,738 - -0.6
1,728,738 - -1.7
1,728,738 - +0.0
1,728,738 - +0.4
1,728,738 - -0.2
1,728,738 - -0.4
1,728,738 - -0.2
1,728,916 + PP_1523 0.49 -0.2
1,728,916 + PP_1523 0.49 -0.4
1,728,936 + PP_1523 0.55 +0.7
1,728,989 + PP_1523 0.69 -1.0
1,728,990 - PP_1523 0.69 +0.5
1,728,990 - PP_1523 0.69 -0.6
1,729,082 - -0.3
1,729,082 - -0.3
1,729,082 - +0.3
1,729,107 - -0.4
1,729,144 - +0.8
1,729,150 - +0.3

Or see this region's nucleotide sequence