Strain Fitness in Pseudomonas putida KT2440 around PP_1517

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
1,720,405	+		PP_1516	0.13	+0.6
1,720,624	+		PP_1516	0.33	-2.0
1,720,666	+		PP_1516	0.37	+0.1
1,720,667	-		PP_1516	0.37	-0.1
1,720,733	-		PP_1516	0.43	-0.1
1,720,757	-		PP_1516	0.45	+0.2
1,720,763	+		PP_1516	0.46	+0.3
1,721,215	+		PP_1516	0.87	-1.4
1,721,216	-		PP_1516	0.87	-0.4
1,721,288	+				+0.5
1,721,310	-				+0.5
1,721,336	+				+0.5
1,721,337	-				+0.6
1,721,337	-				+0.2
1,721,359	+				+0.8
1,721,603	-				+0.3
1,721,796	+		PP_1517	0.14	+0.5
1,721,796	+		PP_1517	0.14	-0.8
1,721,796	+		PP_1517	0.14	-0.7
1,721,796	+		PP_1517	0.14	-0.2
1,721,796	+		PP_1517	0.14	+1.0
1,721,797	-		PP_1517	0.14	+0.6
1,721,800	+		PP_1517	0.14	+0.5
1,721,800	+		PP_1517	0.14	-0.4
1,721,800	+		PP_1517	0.14	-0.4
1,721,800	+		PP_1517	0.14	+0.4
1,721,800	+		PP_1517	0.14	-1.3
1,721,800	+		PP_1517	0.14	+0.0
1,721,827	+		PP_1517	0.15	-0.0
1,721,845	+		PP_1517	0.16	+0.1
1,721,846	-		PP_1517	0.16	-1.0
1,721,857	-		PP_1517	0.16	-0.1
1,722,300	+		PP_1517	0.30	+1.0
1,722,300	+		PP_1517	0.30	+0.6
1,722,300	+		PP_1517	0.30	-0.6
1,722,301	-		PP_1517	0.30	+0.5
1,722,301	-		PP_1517	0.30	-1.1
1,722,378	-		PP_1517	0.33	-0.6
1,722,378	-		PP_1517	0.33	+0.3
1,722,505	+		PP_1517	0.37	-0.8
1,722,505	+		PP_1517	0.37	-0.2
1,722,505	+		PP_1517	0.37	-0.3
1,722,506	-		PP_1517	0.37	+0.7
1,722,506	-		PP_1517	0.37	+0.3
1,722,506	-		PP_1517	0.37	+0.3
1,722,506	-				-0.8
1,722,506	-		PP_1517	0.37	-1.1
1,722,506	-		PP_1517	0.37	+0.3
1,722,646	+		PP_1517	0.42	-0.0
1,722,647	-		PP_1517	0.42	-2.5
1,722,647	-		PP_1517	0.42	-1.3
1,722,647	-		PP_1517	0.42	-0.4
1,722,647	-		PP_1517	0.42	+0.2
1,722,745	+		PP_1517	0.45	-0.7
1,722,746	-		PP_1517	0.45	+0.6
1,722,821	-		PP_1517	0.47	+0.6
1,722,821	-		PP_1517	0.47	+0.0
1,722,885	-		PP_1517	0.49	-1.8
1,722,901	+		PP_1517	0.50	-0.7
1,722,916	+		PP_1517	0.50	-0.3
1,722,917	-		PP_1517	0.51	-0.2
1,722,917	-		PP_1517	0.51	+0.5
1,722,951	-		PP_1517	0.52	+1.1
1,722,968	+		PP_1517	0.52	+1.2
1,722,968	+		PP_1517	0.52	-0.6
1,723,165	+		PP_1517	0.59	-0.8
1,723,165	+		PP_1517	0.59	-0.5
1,723,165	+		PP_1517	0.59	+1.5
1,723,166	-		PP_1517	0.59	-1.4
1,723,166	-		PP_1517	0.59	+0.8
1,723,166	-		PP_1517	0.59	+0.1
1,723,166	-		PP_1517	0.59	+0.4
1,723,166	-		PP_1517	0.59	-0.8
1,723,174	+		PP_1517	0.59	+0.6
1,723,175	-		PP_1517	0.59	-0.9
1,723,175	-		PP_1517	0.59	+0.7
1,723,175	-		PP_1517	0.59	+0.3
1,723,175	-		PP_1517	0.59	+0.3
1,723,553	+		PP_1517	0.71	-1.3
1,723,553	+		PP_1517	0.71	+0.5
1,723,776	+		PP_1517	0.79	-0.3
1,723,776	+		PP_1517	0.79	-0.5
1,723,777	-		PP_1517	0.79	-0.0
1,723,777	-		PP_1517	0.79	-0.3
1,723,777	-		PP_1517	0.79	+0.1
1,723,777	-		PP_1517	0.79	+0.4
1,723,822	-		PP_1517	0.80	+0.2
1,723,822	-		PP_1517	0.80	-1.8
1,723,826	-		PP_1517	0.80	-0.3
1,723,972	-		PP_1517	0.85	-0.6
1,723,991	+		PP_1517	0.86	+0.7
1,723,991	+		PP_1517	0.86	-1.1
1,723,991	+		PP_1517	0.86	-0.5
1,724,201	+				-0.3
1,724,201	+				-0.9
1,724,201	+				-0.8
1,724,201	+				-0.4
1,724,202	-				-0.3
1,724,202	-				-0.4
1,724,313	+				-0.2
1,724,314	-				-0.6
1,724,324	-				-0.9
1,724,376	+				-0.1
1,724,376	+				-2.0
1,724,377	-				+0.6
1,724,377	-				+1.2
1,724,377	-				+0.2
1,724,377	-				+0.9
1,724,377	-				-0.1
1,724,401	+				+0.4
1,724,453	+				-1.0
1,724,603	+		PP_1518	0.18	+1.0
1,724,604	-		PP_1518	0.18	+0.6
1,724,604	-		PP_1518	0.18	+0.7
1,724,669	+		PP_1518	0.27	-0.4
1,724,669	+		PP_1518	0.27	+0.6
1,724,670	-		PP_1518	0.27	+0.7
1,724,670	-		PP_1518	0.27	-1.2
1,724,670	-		PP_1518	0.27	+0.6
1,724,670	-		PP_1518	0.27	-0.2
1,724,760	-		PP_1518	0.40	+1.0
1,725,194	+				+0.7
1,725,195	-				-1.0
1,725,195	-				+0.7
1,725,195	-				-0.8
1,725,230	-				-0.6
1,725,320	-		PP_1519	0.30	-0.6
1,725,320	-		PP_1519	0.30	-0.7
1,725,320	-		PP_1519	0.30	+1.7
1,725,320	-		PP_1519	0.30	+1.2
1,725,359	+		PP_1519	0.39	+0.8
1,725,359	+				+0.5
1,725,359	+		PP_1519	0.39	+0.7
1,725,359	+		PP_1519	0.39	+0.6
1,725,359	+		PP_1519	0.39	-0.7
1,725,360	-		PP_1519	0.40	+0.5
1,725,360	-		PP_1519	0.40	+0.1
1,725,360	-		PP_1519	0.40	+0.1
1,725,360	-		PP_1519	0.40	+1.6