Strain Fitness in Pseudomonas putida KT2440 around PP_1457

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
1,660,953	-		PP_1454	0.80	+0.6
1,661,005	+		PP_1454	0.90	+1.4
1,661,005	+		PP_1454	0.90	-0.4
1,661,005	+		PP_1454	0.90	+0.1
1,661,006	-				+0.3
1,661,006	-				+0.4
1,661,006	-				-1.2
1,661,006	-				-0.9
1,661,140	+		PP_1455	0.50	+0.5
1,661,223	+		PP_1455	0.87	+0.5
1,661,224	-		PP_1455	0.88	-0.3
1,661,224	-		PP_1455	0.88	-0.7
1,661,263	+				+0.7
1,661,263	+				-0.8
1,661,264	-				+1.2
1,661,335	+				-1.2
1,661,335	+				-0.9
1,661,336	-				+0.1
1,661,347	+				+0.4
1,661,347	+				-0.5
1,661,347	+				+0.0
1,661,361	-				+0.9
1,661,361	-				-0.3
1,661,374	+				+0.4
1,661,374	+				-1.3
1,661,375	-				+0.8
1,661,375	-				-0.2
1,661,375	-				+1.2
1,661,512	+		PP_1456	0.39	-0.1
1,661,512	+		PP_1456	0.39	-0.1
1,661,512	+		PP_1456	0.39	-0.4
1,661,512	+		PP_1456	0.39	+0.1
1,661,513	-		PP_1456	0.39	+0.8
1,661,513	-		PP_1456	0.39	+1.2
1,661,513	-		PP_1456	0.39	-0.8
1,661,513	-		PP_1456	0.39	-0.9
1,661,658	+		PP_1456	0.70	-0.0
1,661,658	+		PP_1456	0.70	+0.1
1,661,659	-		PP_1456	0.71	+0.6
1,661,802	+				-0.4
1,661,802	+				+0.1
1,661,803	-				-0.6
1,661,803	-				-0.5
1,661,916	+				+1.0
1,661,917	-				-0.3
1,661,985	+				+1.0
1,661,985	+				-1.5
1,661,985	+				-0.4
1,661,985	+				-0.1
1,662,002	+		PP_1457	0.11	-0.1
1,662,002	+		PP_1457	0.11	+0.4
1,662,104	+		PP_1457	0.20	+0.2
1,662,104	+		PP_1457	0.20	-1.3
1,662,104	+		PP_1457	0.20	-0.5
1,662,104	+		PP_1457	0.20	-0.1
1,662,104	+		PP_1457	0.20	-0.5
1,662,105	-		PP_1457	0.20	+0.2
1,662,105	-		PP_1457	0.20	-0.3
1,662,267	-		PP_1457	0.33	+1.1
1,662,284	+		PP_1457	0.35	+1.2
1,662,284	+		PP_1457	0.35	-0.1
1,662,284	+		PP_1457	0.35	-1.3
1,662,284	+		PP_1457	0.35	-0.7
1,662,284	+				-0.1
1,662,284	+		PP_1457	0.35	-0.2
1,662,293	+		PP_1457	0.36	+0.6
1,662,411	-		PP_1457	0.46	-0.1
1,662,411	-		PP_1457	0.46	+0.4
1,662,476	+		PP_1457	0.51	+0.2
1,663,094	-				-1.6
1,663,103	+				+1.2
1,663,103	+				+0.6
1,663,166	-				+0.4
1,663,254	-		PP_1458	0.12	+0.7
1,663,254	-		PP_1458	0.12	-1.0
1,663,255	+		PP_1458	0.13	-0.1
1,663,255	+		PP_1458	0.13	-0.1
1,663,274	+		PP_1458	0.14	-0.2
1,663,275	-		PP_1458	0.14	-0.7
1,663,276	+		PP_1458	0.14	+0.0
1,663,277	-		PP_1458	0.14	+0.8
1,663,413	-		PP_1458	0.25	+0.4
1,663,425	+		PP_1458	0.26	-0.0
1,663,559	-		PP_1458	0.36	+0.6
1,663,579	+		PP_1458	0.37	-0.2
1,663,579	+		PP_1458	0.37	-0.1
1,663,580	-		PP_1458	0.38	-0.2
1,663,580	-		PP_1458	0.38	+0.6
1,663,580	-		PP_1458	0.38	-0.5
1,663,607	-		PP_1458	0.40	-0.6
1,663,618	+		PP_1458	0.40	+0.0
1,663,664	-		PP_1458	0.44	-0.2
1,663,759	+		PP_1458	0.51	+0.2
1,663,759	+		PP_1458	0.51	+0.7
1,663,759	+		PP_1458	0.51	+0.3
1,663,759	+		PP_1458	0.51	+0.8
1,663,760	-		PP_1458	0.51	+0.3
1,663,760	-		PP_1458	0.51	+0.7
1,663,760	-		PP_1458	0.51	+0.8
1,663,767	+		PP_1458	0.52	-0.3
1,663,767	+		PP_1458	0.52	-1.3
1,663,768	-		PP_1458	0.52	-0.7
1,664,050	+		PP_1458	0.74	+1.0
1,664,051	-		PP_1458	0.74	+1.0
1,664,051	-		PP_1458	0.74	+0.8