Strain Fitness in Pseudomonas putida KT2440 around PP_1362

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
1,551,239	+				-1.2
1,551,239	+				-2.2
1,551,239	+				-0.8
1,551,240	-				-1.9
1,551,240	-				-0.8
1,551,240	-				-2.5
1,551,301	+				-0.8
1,551,431	+				-2.7
1,551,431	+				+0.2
1,551,432	-				+1.3
1,551,432	-				-1.7
1,551,432	-				+0.5
1,551,622	+		PP_1362	0.18	+0.9
1,551,659	+		PP_1362	0.20	-1.2
1,551,716	+		PP_1362	0.24	-0.3
1,551,716	+		PP_1362	0.24	+0.1
1,551,716	+		PP_1362	0.24	-0.8
1,551,716	+		PP_1362	0.24	-0.5
1,551,716	+		PP_1362	0.24	-0.1
1,551,717	-		PP_1362	0.24	-0.1
1,551,717	-		PP_1362	0.24	+0.8
1,552,212	-		PP_1362	0.58	-0.6
1,552,212	-				-0.8
1,552,243	+		PP_1362	0.60	+0.7
1,552,253	+		PP_1362	0.61	-1.7
1,552,253	+		PP_1362	0.61	+0.8
1,552,488	-		PP_1362	0.77	-1.2
1,552,833	+				-1.8
1,552,833	+				+0.5
1,552,833	+				+0.1
1,552,833	+				-1.5
1,552,834	-				-0.0
1,552,834	-				-0.8
1,552,834	-				-0.3
1,552,834	-				-0.2
1,552,835	+				-1.5
1,552,835	+				+1.2
1,552,856	+				-0.1
1,552,874	+				-0.7
1,552,895	-				-1.2
1,552,977	+				+0.1
1,552,978	-				+0.3
1,553,086	+		PP_1363	0.29	-0.1
1,553,095	+		PP_1363	0.31	-0.7
1,553,095	+		PP_1363	0.31	-0.4
1,553,224	+		PP_1363	0.62	+0.6
1,553,224	+		PP_1363	0.62	-0.4
1,553,225	-		PP_1363	0.62	+0.5
1,553,225	-		PP_1363	0.62	-2.8
1,553,245	+		PP_1363	0.66	+0.1
1,553,245	+		PP_1363	0.66	+0.3
1,553,245	+		PP_1363	0.66	+0.0
1,553,246	-		PP_1363	0.67	-1.3
1,553,246	-		PP_1363	0.67	+0.6
1,553,251	+		PP_1363	0.68	+0.7
1,553,251	+		PP_1363	0.68	+0.4
1,553,251	+		PP_1363	0.68	+0.6
1,553,251	+		PP_1363	0.68	+0.0
1,553,281	+		PP_1363	0.75	-0.4
1,553,282	-		PP_1363	0.75	-0.6
1,553,282	-		PP_1363	0.75	+1.8
1,553,282	-		PP_1363	0.75	+1.0
1,553,282	-		PP_1363	0.75	+0.4
1,553,443	-				+0.4
1,553,443	-				+1.2
1,553,470	-		PP_1364	0.15	+0.2
1,553,470	-		PP_1364	0.15	+0.8
1,553,476	+		PP_1364	0.16	-2.0
1,553,477	-		PP_1364	0.17	+0.1
1,553,477	-		PP_1364	0.17	+0.3
1,553,499	+		PP_1364	0.21	+0.2
1,553,500	-		PP_1364	0.22	+0.7
1,553,546	+		PP_1364	0.31	+1.3
1,553,546	+		PP_1364	0.31	-0.6
1,553,546	+		PP_1364	0.31	-0.3
1,553,547	-		PP_1364	0.31	+0.6
1,553,547	-		PP_1364	0.31	-0.4
1,553,547	-		PP_1364	0.31	+0.5
1,553,547	-		PP_1364	0.31	+0.8
1,553,547	-		PP_1364	0.31	-1.9
1,553,547	-		PP_1364	0.31	+0.6
1,553,547	-		PP_1364	0.31	+1.0
1,553,547	-		PP_1364	0.31	-0.0
1,553,547	-		PP_1364	0.31	+0.4
1,553,600	+		PP_1364	0.43	+0.5
1,553,600	+		PP_1364	0.43	+0.7
1,553,601	-		PP_1364	0.43	-1.2
1,553,601	-		PP_1364	0.43	+0.1
1,553,665	+		PP_1364	0.56	+0.7
1,553,683	-		PP_1364	0.60	+0.0
1,553,781	+		PP_1364	0.81	-0.2
1,553,781	+		PP_1364	0.81	-0.5
1,553,781	+		PP_1364	0.81	+1.0
1,553,781	+		PP_1364	0.81	+0.3
1,553,781	+		PP_1364	0.81	-1.2
1,553,782	-		PP_1364	0.81	-0.3
1,553,782	-		PP_1364	0.81	+1.7
1,553,782	-		PP_1364	0.81	+0.5
1,553,782	-		PP_1364	0.81	-0.5
1,553,806	+		PP_1364	0.86	+0.1
1,553,806	+		PP_1364	0.86	-0.4
1,553,806	+		PP_1364	0.86	+0.2