Strain Fitness in Pseudomonas putida KT2440 around PP_1125

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
1,285,649	+				-2.4
1,285,649	+				+0.4
1,285,649	+				-0.2
1,285,649	+				+0.3
1,285,649	+				-0.2
1,285,649	+				+0.1
1,285,649	+				-1.0
1,285,649	+				-0.4
1,285,649	+				-0.5
1,285,649	+				-1.5
1,285,649	+				-0.1
1,285,650	-				-0.2
1,285,650	-				+0.3
1,285,650	-				+0.1
1,285,650	-				+1.5
1,285,650	-				+0.4
1,285,650	-				+1.1
1,285,650	-				-0.6
1,285,650	-				+0.6
1,285,650	-				+2.1
1,285,650	-				+0.6
1,285,662	+				+0.1
1,286,266	+		PP_1124	0.45	+0.5
1,286,267	-		PP_1124	0.46	-0.8
1,286,267	-		PP_1124	0.46	+0.7
1,286,322	+		PP_1124	0.57	+0.8
1,286,322	+		PP_1124	0.57	+1.5
1,286,469	+		PP_1124	0.89	+0.2
1,286,497	+				-0.5
1,286,497	+				+0.4
1,286,557	-				+0.4
1,286,557	-				-0.4
1,286,561	+				+1.1
1,286,561	+				-0.3
1,286,589	-				-1.0
1,286,657	+				-2.7
1,286,696	+				+1.0
1,286,831	+				-1.0
1,286,831	+				-1.1
1,286,831	+				-1.8
1,286,831	+				-1.2
1,286,832	-				+0.1
1,286,832	-				-0.6
1,286,832	-				-1.9
1,286,997	-		PP_1125	0.18	-0.7
1,286,997	-		PP_1125	0.18	-1.3
1,287,272	+		PP_1125	0.30	-1.5
1,287,272	+		PP_1125	0.30	+1.5
1,287,273	-		PP_1125	0.31	-1.2
1,287,273	-		PP_1125	0.31	-2.4
1,287,273	-		PP_1125	0.31	-1.5
1,287,389	+		PP_1125	0.36	-1.2
1,287,389	+		PP_1125	0.36	+0.2
1,287,389	+		PP_1125	0.36	-0.0
1,287,389	+		PP_1125	0.36	-2.0
1,287,389	+		PP_1125	0.36	-1.2
1,287,390	-		PP_1125	0.36	-1.0
1,287,390	-		PP_1125	0.36	-1.5
1,287,390	-		PP_1125	0.36	+0.2
1,287,390	-		PP_1125	0.36	+0.5
1,287,545	+		PP_1125	0.43	-3.1
1,287,545	+		PP_1125	0.43	-1.8
1,287,546	-		PP_1125	0.43	-1.2
1,287,546	-		PP_1125	0.43	-2.4
1,287,546	-		PP_1125	0.43	-2.2
1,287,579	+		PP_1125	0.45	-1.2
1,287,579	+		PP_1125	0.45	-0.6
1,287,579	+		PP_1125	0.45	-0.9
1,287,579	+		PP_1125	0.45	-2.1
1,287,579	+		PP_1125	0.45	-2.6
1,287,579	+		PP_1125	0.45	-1.4
1,287,580	-		PP_1125	0.45	-2.2
1,287,580	-		PP_1125	0.45	-1.8
1,288,485	-		PP_1125	0.87	+0.3
1,288,485	-		PP_1125	0.87	-1.8
1,288,485	-		PP_1125	0.87	-0.8
1,288,485	-		PP_1125	0.87	-0.9
1,288,672	+				-1.4
1,288,672	+				-2.0
1,288,720	+				-1.5
1,288,721	-				-1.0
1,288,797	-				+0.2
1,288,842	-				-0.5
1,288,980	+		PP_1126	0.11	-0.0
1,288,980	+		PP_1126	0.11	-1.6
1,289,442	+		PP_1126	0.30	+0.7
1,289,475	+		PP_1126	0.32	-1.3
1,289,475	+		PP_1126	0.32	+0.4
1,289,475	+		PP_1126	0.32	+1.0
1,289,475	+		PP_1126	0.32	-0.0
1,289,476	-		PP_1126	0.32	-0.5
1,289,476	-		PP_1126	0.32	+0.3
1,289,513	-		PP_1126	0.33	-0.2
1,289,608	+		PP_1126	0.37	+0.6
1,289,608	-		PP_1126	0.37	-0.1
1,289,608	-		PP_1126	0.37	-0.3
1,289,608	-		PP_1126	0.37	-1.6
1,289,683	-		PP_1126	0.41	+1.4
1,289,753	+		PP_1126	0.44	+1.0
1,289,753	+		PP_1126	0.44	+0.6
1,289,753	+		PP_1126	0.44	-0.2
1,289,753	+		PP_1126	0.44	-0.3
1,289,754	-		PP_1126	0.44	-0.3
1,289,757	+		PP_1126	0.44	+0.2
1,289,757	+		PP_1126	0.44	+0.2
1,289,758	-		PP_1126	0.44	+0.3
1,289,758	-		PP_1126	0.44	+0.3
1,289,758	-		PP_1126	0.44	+0.7