Strain Fitness in Pseudomonas putida KT2440 around PP_0891

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
1,032,384	+		PP_0889	0.42	-0.0
1,032,384	+		PP_0889	0.42	-1.4
1,032,390	+		PP_0889	0.42	-0.8
1,032,390	+		PP_0889	0.42	-0.3
1,032,426	+		PP_0889	0.46	+0.1
1,032,426	+		PP_0889	0.46	-0.7
1,032,429	-		PP_0889	0.46	+1.7
1,032,505	-		PP_0889	0.53	-0.1
1,032,505	-		PP_0889	0.53	+1.6
1,032,577	-		PP_0889	0.59	+0.7
1,032,648	+		PP_0889	0.65	+0.6
1,032,648	+		PP_0889	0.65	+0.5
1,032,648	+		PP_0889	0.65	+0.3
1,032,648	+		PP_0889	0.65	-0.8
1,032,648	+		PP_0889	0.65	-0.1
1,032,648	+		PP_0889	0.65	-0.0
1,032,648	+		PP_0889	0.65	-0.1
1,032,649	-		PP_0889	0.65	+0.2
1,032,649	-		PP_0889	0.65	-0.7
1,032,649	-		PP_0889	0.65	-0.0
1,032,649	-		PP_0889	0.65	-1.4
1,032,652	+		PP_0889	0.66	-0.5
1,032,652	+		PP_0889	0.66	+0.0
1,032,652	+		PP_0889	0.66	+0.4
1,032,653	-		PP_0889	0.66	-0.4
1,032,653	-		PP_0889	0.66	+0.8
1,032,664	-		PP_0889	0.67	+0.3
1,032,664	-		PP_0889	0.67	+0.6
1,032,669	+		PP_0889	0.67	-0.3
1,032,695	+		PP_0889	0.69	-0.1
1,032,695	+		PP_0889	0.69	+0.0
1,032,760	+		PP_0889	0.75	+0.1
1,032,761	-		PP_0889	0.75	-0.2
1,032,761	-		PP_0889	0.75	-0.0
1,032,922	+		PP_0889	0.89	+0.0
1,032,922	+		PP_0889	0.89	-0.1
1,032,922	+		PP_0889	0.89	-2.4
1,032,922	+		PP_0889	0.89	+0.6
1,032,922	+		PP_0889	0.89	-0.2
1,032,922	+		PP_0889	0.89	-0.7
1,032,923	-		PP_0889	0.89	-0.0
1,032,923	-		PP_0889	0.89	+1.2
1,032,923	-		PP_0889	0.89	+0.1
1,032,923	-		PP_0889	0.89	-2.4
1,032,923	-		PP_0889	0.89	-0.2
1,032,923	-		PP_0889	0.89	-0.3
1,032,924	+		PP_0889	0.89	-0.3
1,032,924	+		PP_0889	0.89	+0.1
1,032,924	+		PP_0889	0.89	+0.3
1,032,924	+		PP_0889	0.89	+0.8
1,032,924	+		PP_0889	0.89	-0.1
1,032,925	-		PP_0889	0.90	-0.0
1,032,925	-				-0.4
1,032,925	-		PP_0889	0.90	+0.8
1,032,925	-		PP_0889	0.90	-0.5
1,032,925	-		PP_0889	0.90	-0.1
1,032,984	+				-0.7
1,032,984	+				+0.6
1,032,985	-				-0.1
1,033,079	+		PP_0890	0.13	-0.7
1,033,125	+		PP_0890	0.29	-0.1
1,033,125	+		PP_0890	0.29	+0.1
1,033,126	-		PP_0890	0.29	-0.7
1,033,151	+		PP_0890	0.37	-0.9
1,033,151	+		PP_0890	0.37	+0.5
1,033,151	+		PP_0890	0.37	+0.0
1,033,152	-		PP_0890	0.38	-1.3
1,033,152	-		PP_0890	0.38	+0.0
1,033,152	-		PP_0890	0.38	+1.6
1,033,190	+		PP_0890	0.51	-1.3
1,033,191	-		PP_0890	0.51	+0.0
1,033,191	-		PP_0890	0.51	+0.5
1,033,202	+		PP_0890	0.55	+0.4
1,033,203	-		PP_0890	0.55	-0.1
1,033,349	-				+0.0
1,033,412	+				+0.3
1,033,413	-				+0.0
1,033,557	+		PP_0891	0.30	-0.7
1,033,771	+		PP_0891	0.67	-0.4
1,033,771	+		PP_0891	0.67	+0.5
1,033,771	+		PP_0891	0.67	-1.7
1,033,772	-		PP_0891	0.67	-1.6
1,033,772	-		PP_0891	0.67	+0.3
1,033,772	-		PP_0891	0.67	-1.7
1,033,772	-		PP_0891	0.67	-1.0
1,034,090	+		PP_0892	0.11	-0.5
1,034,090	+		PP_0892	0.11	+0.7
1,034,090	+		PP_0892	0.11	+0.0
1,034,090	+		PP_0892	0.11	+1.4
1,034,186	+		PP_0892	0.19	+0.0
1,034,186	+		PP_0892	0.19	+0.2
1,034,187	-		PP_0892	0.19	+0.5
1,034,244	-		PP_0892	0.24	-0.9
1,034,255	+		PP_0892	0.25	-0.3
1,034,255	+		PP_0892	0.25	-0.3
1,034,256	-		PP_0892	0.25	+0.2
1,034,257	+		PP_0892	0.25	+0.4
1,034,258	-		PP_0892	0.25	+0.5
1,034,295	-		PP_0892	0.29	-0.1
1,034,574	-		PP_0892	0.53	-0.0
1,034,616	+		PP_0892	0.56	+0.3
1,034,616	+		PP_0892	0.56	+1.0
1,034,617	-		PP_0892	0.56	-0.5
1,034,769	+		PP_0892	0.70	-0.6
1,034,789	+		PP_0892	0.71	+1.2
1,034,790	-		PP_0892	0.71	+0.7
1,034,790	-		PP_0892	0.71	+0.9
1,034,790	-		PP_0892	0.71	+0.5
1,034,790	-		PP_0892	0.71	-0.4
1,034,790	-		PP_0892	0.71	+0.6
1,034,792	+		PP_0892	0.72	+0.0
1,034,793	-		PP_0892	0.72	-2.0
1,034,868	+		PP_0892	0.78	-0.2
1,034,868	+		PP_0892	0.78	+0.2
1,034,869	-		PP_0892	0.78	+0.9