Experiment: Formaldehyde 0.03125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0772 and PP_0773 are separated by 118 nucleotides PP_0773 and PP_0774 are separated by 79 nucleotides PP_0774 and PP_0775 are separated by 31 nucleotides PP_0775 and PP_0776 overlap by 2 nucleotides PP_0776 and PP_0777 are separated by 145 nucleotides
PP_0772: PP_0772 - Metallo-beta-lactamase family protein, at 890,074 to 890,718
_0772
PP_0773: PP_0773 - OmpA/MotB domain-containing protein, at 890,837 to 891,547
_0773
PP_0774: PP_0774 - Phosphate acetyltransferase, at 891,627 to 893,714
_0774
PP_0775: PP_0775 - conserved protein of unknown function, at 893,746 to 894,048
_0775
PP_0776: PP_0776 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 894,047 to 894,532
_0776
PP_0777: PP_0777 - Glutathione peroxidase, at 894,678 to 895,160
_0777
Position (kb) 891
892
893
894 Strain fitness (log2 ratio) -1
0
1
2 at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.778 kb on - strand at 890.778 kb on - strand at 890.778 kb on - strand at 890.778 kb on - strand at 890.778 kb on - strand at 890.816 kb on - strand at 890.903 kb on + strand at 890.904 kb on - strand at 890.957 kb on + strand, within PP_0773 at 891.080 kb on + strand, within PP_0773 at 891.224 kb on + strand, within PP_0773 at 891.365 kb on + strand, within PP_0773 at 891.365 kb on + strand, within PP_0773 at 891.366 kb on - strand, within PP_0773 at 891.366 kb on - strand, within PP_0773 at 891.366 kb on - strand, within PP_0773 at 891.366 kb on - strand, within PP_0773 at 891.405 kb on + strand, within PP_0773 at 891.406 kb on - strand, within PP_0773 at 891.512 kb on + strand at 891.512 kb on + strand at 891.512 kb on + strand at 891.513 kb on - strand at 891.513 kb on - strand at 891.540 kb on - strand at 891.555 kb on + strand at 891.556 kb on - strand at 891.556 kb on - strand at 891.663 kb on + strand at 891.664 kb on - strand at 891.668 kb on + strand at 891.668 kb on + strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.771 kb on + strand at 891.788 kb on + strand at 891.789 kb on - strand at 891.893 kb on - strand, within PP_0774 at 891.997 kb on + strand, within PP_0774 at 891.997 kb on + strand, within PP_0774 at 891.997 kb on + strand, within PP_0774 at 891.998 kb on - strand, within PP_0774 at 892.366 kb on + strand, within PP_0774 at 892.756 kb on + strand, within PP_0774 at 892.756 kb on + strand, within PP_0774 at 892.756 kb on + strand, within PP_0774 at 892.757 kb on - strand, within PP_0774 at 892.757 kb on - strand, within PP_0774 at 892.757 kb on - strand, within PP_0774 at 892.757 kb on - strand, within PP_0774 at 892.957 kb on - strand, within PP_0774 at 893.020 kb on + strand, within PP_0774 at 893.192 kb on + strand, within PP_0774 at 893.320 kb on - strand, within PP_0774 at 893.320 kb on - strand, within PP_0774 at 893.320 kb on - strand, within PP_0774 at 893.438 kb on - strand, within PP_0774 at 893.600 kb on + strand at 893.600 kb on + strand at 893.731 kb on - strand at 893.731 kb on - strand at 893.761 kb on - strand at 894.004 kb on + strand, within PP_0775 at 894.004 kb on + strand, within PP_0775 at 894.005 kb on - strand, within PP_0775 at 894.019 kb on + strand at 894.083 kb on + strand at 894.083 kb on + strand at 894.084 kb on - strand at 894.084 kb on - strand at 894.084 kb on - strand at 894.085 kb on + strand at 894.086 kb on - strand at 894.166 kb on + strand, within PP_0776 at 894.248 kb on + strand, within PP_0776 at 894.257 kb on + strand, within PP_0776 at 894.544 kb on - strand at 894.544 kb on - strand at 894.624 kb on + strand at 894.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol% remove 890,777 + -1.1 890,777 + +1.3 890,777 + +0.5 890,777 + +0.4 890,777 + +0.5 890,777 + -0.2 890,777 + +0.1 890,777 + -0.3 890,778 - +0.1 890,778 - +0.3 890,778 - +0.5 890,778 - -1.1 890,778 - -0.5 890,816 - -0.1 890,903 + -0.1 890,904 - +0.7 890,957 + PP_0773 0.17 -0.3 891,080 + PP_0773 0.34 +0.9 891,224 + PP_0773 0.54 +0.0 891,365 + PP_0773 0.74 -0.1 891,365 + PP_0773 0.74 +0.3 891,366 - PP_0773 0.74 -0.3 891,366 - PP_0773 0.74 +0.7 891,366 - PP_0773 0.74 -0.5 891,366 - PP_0773 0.74 -0.9 891,405 + PP_0773 0.80 +0.3 891,406 - PP_0773 0.80 -1.0 891,512 + +0.7 891,512 + +0.6 891,512 + +1.1 891,513 - -0.0 891,513 - -0.5 891,540 - -0.5 891,555 + -0.7 891,556 - -1.1 891,556 - -0.1 891,663 + -0.7 891,664 - +1.1 891,668 + -0.7 891,668 + -0.5 891,669 - -0.7 891,669 - +0.1 891,669 - -1.0 891,669 - +0.3 891,669 - -1.3 891,669 - +0.3 891,669 - +0.0 891,669 - +0.1 891,771 + -0.3 891,788 + -0.0 891,789 - -0.7 891,893 - PP_0774 0.13 +1.0 891,997 + PP_0774 0.18 -0.0 891,997 + PP_0774 0.18 -0.5 891,997 + PP_0774 0.18 -1.5 891,998 - PP_0774 0.18 +0.5 892,366 + PP_0774 0.35 -0.4 892,756 + PP_0774 0.54 +0.5 892,756 + PP_0774 0.54 -0.0 892,756 + PP_0774 0.54 +0.8 892,757 - PP_0774 0.54 -0.7 892,757 - PP_0774 0.54 -1.0 892,757 - PP_0774 0.54 +0.6 892,757 - PP_0774 0.54 -0.8 892,957 - PP_0774 0.64 +0.3 893,020 + PP_0774 0.67 +0.9 893,192 + PP_0774 0.75 +1.3 893,320 - PP_0774 0.81 +0.4 893,320 - PP_0774 0.81 -0.6 893,320 - PP_0774 0.81 +0.2 893,438 - PP_0774 0.87 +1.5 893,600 + -1.1 893,600 + +0.0 893,731 - -0.5 893,731 - -1.3 893,761 - +0.3 894,004 + PP_0775 0.85 -0.2 894,004 + PP_0775 0.85 -0.9 894,005 - PP_0775 0.85 -1.2 894,019 + -1.2 894,083 + +1.4 894,083 + -0.2 894,084 - +1.7 894,084 - +0.7 894,084 - -0.3 894,085 + +0.7 894,086 - +2.4 894,166 + PP_0776 0.24 +1.7 894,248 + PP_0776 0.41 +2.2 894,257 + PP_0776 0.43 +1.7 894,544 - +0.1 894,544 - +1.4 894,624 + -0.5 894,624 + +0.1
Or see this region's nucleotide sequence