Experiment: Formaldehyde 0.03125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0670 and PP_0671 are separated by 121 nucleotides PP_0671 and PP_0672 are separated by 249 nucleotides
PP_0670: PP_0670 - Transporter, bile acid/Na+ symporter family, at 779,517 to 780,470
_0670
PP_0671: PP_0671 - serine hydroxymethyltransferase, at 780,592 to 781,845
_0671
PP_0672: PP_0672 - Sensory box protein, at 782,095 to 785,925
_0672
Position (kb) 780
781
782 Strain fitness (log2 ratio) -2
-1
0
1 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.768 kb on - strand, within PP_0670 at 779.768 kb on - strand, within PP_0670 at 779.769 kb on + strand, within PP_0670 at 779.770 kb on - strand, within PP_0670 at 779.808 kb on + strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 780.037 kb on + strand, within PP_0670 at 780.038 kb on - strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.153 kb on - strand, within PP_0670 at 780.309 kb on + strand, within PP_0670 at 780.309 kb on + strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.329 kb on - strand, within PP_0670 at 780.329 kb on - strand, within PP_0670 at 780.408 kb on - strand at 780.418 kb on - strand at 780.430 kb on + strand at 780.431 kb on - strand at 780.495 kb on + strand at 780.496 kb on - strand at 780.496 kb on - strand at 780.496 kb on - strand at 780.516 kb on - strand at 780.536 kb on - strand at 780.539 kb on - strand at 780.539 kb on - strand at 780.579 kb on - strand at 781.910 kb on - strand at 782.074 kb on + strand at 782.375 kb on + strand at 782.375 kb on + strand at 782.376 kb on - strand at 782.560 kb on + strand, within PP_0672 at 782.561 kb on - strand, within PP_0672 at 782.561 kb on - strand, within PP_0672 at 782.561 kb on - strand, within PP_0672 at 782.816 kb on + strand, within PP_0672 at 782.820 kb on - strand, within PP_0672 at 782.820 kb on - strand, within PP_0672 at 782.820 kb on - strand, within PP_0672
Per-strain Table
Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol% remove 779,767 + PP_0670 0.26 -0.6 779,767 + PP_0670 0.26 +0.4 779,767 + PP_0670 0.26 -0.6 779,767 + PP_0670 0.26 +0.2 779,768 - PP_0670 0.26 -0.3 779,768 - PP_0670 0.26 -0.1 779,769 + PP_0670 0.26 +0.5 779,770 - PP_0670 0.27 +0.1 779,808 + PP_0670 0.31 -1.1 779,809 - PP_0670 0.31 -0.2 779,809 - PP_0670 0.31 -1.0 779,809 - PP_0670 0.31 +0.8 780,037 + PP_0670 0.55 -0.6 780,038 - PP_0670 0.55 -0.9 780,136 + PP_0670 0.65 -0.0 780,136 + PP_0670 0.65 +0.3 780,136 + PP_0670 0.65 -0.3 780,153 - PP_0670 0.67 -0.0 780,309 + PP_0670 0.83 -0.5 780,309 + PP_0670 0.83 -1.0 780,310 - PP_0670 0.83 +1.0 780,310 - PP_0670 0.83 -0.6 780,310 - PP_0670 0.83 -1.1 780,310 - PP_0670 0.83 +0.1 780,329 - PP_0670 0.85 +1.3 780,329 - PP_0670 0.85 +0.2 780,408 - -1.3 780,418 - +0.2 780,430 + +0.1 780,431 - +0.7 780,495 + +0.7 780,496 - -0.6 780,496 - -1.1 780,496 - +1.0 780,516 - +1.6 780,536 - +0.2 780,539 - +0.4 780,539 - +0.5 780,579 - -0.1 781,910 - -1.0 782,074 + -0.4 782,375 + -0.8 782,375 + -1.4 782,376 - -1.8 782,560 + PP_0672 0.12 -1.1 782,561 - PP_0672 0.12 -0.7 782,561 - PP_0672 0.12 +0.2 782,561 - PP_0672 0.12 -1.7 782,816 + PP_0672 0.19 +0.3 782,820 - PP_0672 0.19 -0.0 782,820 - PP_0672 0.19 +1.7 782,820 - PP_0672 0.19 +1.1
Or see this region's nucleotide sequence