Experiment: Formaldehyde 0.03125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0339 and PP_0340 are separated by 383 nucleotides PP_0340 and PP_0341 are separated by 202 nucleotides
PP_0339: PP_0339 - Pyruvate dehydrogenase E1 component, at 408,018 to 410,663
_0339
PP_0340: PP_0340 - Glutamate-ammonia-ligase adenylyltransferase, at 411,047 to 413,980
_0340
PP_0341: PP_0341 - ADP-heptose:LPS heptosyltransferase II, at 414,183 to 415,232
_0341
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 410.051 kb on - strand, within PP_0339 at 410.329 kb on + strand, within PP_0339 at 410.329 kb on + strand, within PP_0339 at 410.330 kb on - strand, within PP_0339 at 410.354 kb on + strand, within PP_0339 at 410.811 kb on + strand at 411.041 kb on + strand at 411.054 kb on + strand at 411.400 kb on + strand, within PP_0340 at 411.401 kb on - strand, within PP_0340 at 411.416 kb on - strand, within PP_0340 at 411.604 kb on + strand, within PP_0340 at 411.785 kb on + strand, within PP_0340 at 411.785 kb on + strand, within PP_0340 at 411.785 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.834 kb on - strand, within PP_0340 at 411.834 kb on - strand, within PP_0340 at 411.836 kb on + strand, within PP_0340 at 411.836 kb on + strand, within PP_0340 at 411.837 kb on - strand, within PP_0340 at 411.948 kb on - strand, within PP_0340 at 412.063 kb on + strand, within PP_0340 at 412.075 kb on - strand, within PP_0340 at 412.075 kb on - strand, within PP_0340 at 412.075 kb on - strand, within PP_0340 at 412.075 kb on - strand, within PP_0340 at 412.178 kb on + strand, within PP_0340 at 412.179 kb on - strand, within PP_0340 at 412.179 kb on - strand, within PP_0340 at 412.179 kb on - strand, within PP_0340 at 412.217 kb on + strand, within PP_0340 at 412.217 kb on + strand, within PP_0340 at 412.218 kb on - strand, within PP_0340 at 412.233 kb on - strand, within PP_0340 at 412.316 kb on + strand, within PP_0340 at 412.316 kb on + strand, within PP_0340 at 412.364 kb on + strand, within PP_0340 at 412.364 kb on + strand, within PP_0340 at 412.725 kb on - strand, within PP_0340 at 412.731 kb on + strand, within PP_0340 at 412.732 kb on - strand, within PP_0340 at 413.269 kb on + strand, within PP_0340 at 413.351 kb on + strand, within PP_0340 at 413.351 kb on + strand, within PP_0340 at 413.352 kb on - strand, within PP_0340 at 413.352 kb on - strand, within PP_0340 at 413.352 kb on - strand, within PP_0340 at 413.352 kb on - strand, within PP_0340 at 413.362 kb on + strand, within PP_0340 at 413.535 kb on + strand, within PP_0340 at 413.536 kb on - strand, within PP_0340 at 413.583 kb on - strand, within PP_0340 at 413.664 kb on + strand, within PP_0340 at 413.674 kb on + strand, within PP_0340 at 413.761 kb on - strand at 413.761 kb on - strand at 413.852 kb on + strand at 413.853 kb on - strand at 413.974 kb on - strand at 413.995 kb on - strand at 414.022 kb on + strand at 414.022 kb on + strand at 414.079 kb on - strand at 414.094 kb on + strand at 414.110 kb on + strand at 414.178 kb on + strand at 414.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol% remove 410,051 - PP_0339 0.77 +1.8 410,329 + PP_0339 0.87 +1.2 410,329 + PP_0339 0.87 +0.4 410,330 - PP_0339 0.87 -1.7 410,354 + PP_0339 0.88 +0.3 410,811 + -2.0 411,041 + +0.4 411,054 + +0.2 411,400 + PP_0340 0.12 -1.7 411,401 - PP_0340 0.12 -0.9 411,416 - PP_0340 0.13 -0.8 411,604 + PP_0340 0.19 -1.2 411,785 + PP_0340 0.25 -1.4 411,785 + PP_0340 0.25 -1.3 411,785 + PP_0340 0.25 -1.3 411,833 + PP_0340 0.27 -0.7 411,833 + PP_0340 0.27 +0.7 411,833 + PP_0340 0.27 -0.8 411,833 + PP_0340 0.27 +0.1 411,833 + PP_0340 0.27 +0.4 411,834 - PP_0340 0.27 -2.5 411,834 - PP_0340 0.27 -3.4 411,836 + PP_0340 0.27 -0.5 411,836 + PP_0340 0.27 -0.2 411,837 - PP_0340 0.27 -2.7 411,948 - PP_0340 0.31 -3.5 412,063 + PP_0340 0.35 -0.5 412,075 - PP_0340 0.35 -1.7 412,075 - PP_0340 0.35 -2.1 412,075 - PP_0340 0.35 -1.0 412,075 - PP_0340 0.35 +0.2 412,178 + PP_0340 0.39 +0.8 412,179 - PP_0340 0.39 -2.1 412,179 - PP_0340 0.39 -3.6 412,179 - PP_0340 0.39 -3.5 412,217 + PP_0340 0.40 -2.5 412,217 + PP_0340 0.40 -1.1 412,218 - PP_0340 0.40 -1.3 412,233 - PP_0340 0.40 -1.3 412,316 + PP_0340 0.43 +0.0 412,316 + PP_0340 0.43 -0.6 412,364 + PP_0340 0.45 -0.8 412,364 + PP_0340 0.45 -1.2 412,725 - PP_0340 0.57 -3.0 412,731 + PP_0340 0.57 -0.7 412,732 - PP_0340 0.57 -2.7 413,269 + PP_0340 0.76 -2.3 413,351 + PP_0340 0.79 -2.0 413,351 + PP_0340 0.79 -1.1 413,352 - PP_0340 0.79 -0.9 413,352 - PP_0340 0.79 -1.4 413,352 - PP_0340 0.79 -1.3 413,352 - PP_0340 0.79 -2.3 413,362 + PP_0340 0.79 -2.6 413,535 + PP_0340 0.85 -3.9 413,536 - PP_0340 0.85 -1.0 413,583 - PP_0340 0.86 -1.4 413,664 + PP_0340 0.89 -1.0 413,674 + PP_0340 0.90 -0.3 413,761 - -3.4 413,761 - -2.2 413,852 + -2.9 413,853 - -0.7 413,974 - -1.3 413,995 - -0.7 414,022 + -1.2 414,022 + +0.1 414,079 - -0.2 414,094 + +0.8 414,110 + +0.1 414,178 + -0.8 414,178 + +0.7
Or see this region's nucleotide sequence