Strain Fitness in Pseudomonas putida KT2440 around PP_0087

Experiment: Formaldehyde 0.03125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0084 and PP_0085 overlap by 4 nucleotidesPP_0085 and PP_0086 overlap by 15 nucleotidesPP_0086 and PP_0087 are separated by 58 nucleotidesPP_0087 and PP_0088 are separated by 71 nucleotides PP_0084: PP_0084 - HTH-type transcriptional regulator TrpI, at 93,704 to 94,600 _0084 PP_0085: PP_0085 - conserved protein of unknown function, at 94,597 to 95,085 _0085 PP_0086: PP_0086 - conserved protein of unknown function, at 95,071 to 95,286 _0086 PP_0087: PP_0087 - conserved exported protein of unknown function, at 95,345 to 95,608 _0087 PP_0088: PP_0088 - putative alkanal monooxygenase, at 95,680 to 96,684 _0088 Position (kb) 95 96Strain fitness (log2 ratio) -2 -1 0 1 2at 94.358 kb on + strand, within PP_0084at 94.358 kb on + strand, within PP_0084at 94.358 kb on + strand, within PP_0084at 94.382 kb on + strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.385 kb on + strand, within PP_0084at 94.386 kb on - strand, within PP_0084at 94.386 kb on - strand, within PP_0084at 94.386 kb on - strand, within PP_0084at 94.386 kb on - strand, within PP_0084at 94.495 kb on + strand, within PP_0084at 94.496 kb on - strand, within PP_0084at 94.599 kb on - strandat 94.612 kb on + strandat 94.613 kb on - strandat 94.619 kb on + strandat 94.667 kb on + strand, within PP_0085at 94.667 kb on + strand, within PP_0085at 94.667 kb on + strand, within PP_0085at 94.667 kb on + strand, within PP_0085at 94.668 kb on - strand, within PP_0085at 94.668 kb on - strand, within PP_0085at 94.736 kb on + strand, within PP_0085at 94.737 kb on - strand, within PP_0085at 94.750 kb on + strand, within PP_0085at 94.900 kb on - strand, within PP_0085at 94.900 kb on - strand, within PP_0085at 94.939 kb on + strand, within PP_0085at 94.940 kb on - strand, within PP_0085at 94.940 kb on - strand, within PP_0085at 95.016 kb on + strand, within PP_0085at 95.017 kb on - strand, within PP_0085at 95.035 kb on + strand, within PP_0085at 95.036 kb on - strand, within PP_0085at 95.089 kb on + strandat 95.090 kb on - strandat 95.142 kb on + strand, within PP_0086at 95.142 kb on + strand, within PP_0086at 95.142 kb on + strand, within PP_0086at 95.280 kb on + strandat 95.280 kb on + strandat 95.280 kb on + strandat 95.302 kb on + strandat 95.303 kb on - strandat 95.303 kb on - strandat 95.303 kb on - strandat 95.303 kb on - strandat 95.303 kb on - strandat 95.323 kb on + strandat 95.324 kb on - strandat 95.514 kb on - strand, within PP_0087at 95.563 kb on + strand, within PP_0087at 95.563 kb on + strand, within PP_0087at 95.564 kb on - strand, within PP_0087at 95.606 kb on + strandat 95.607 kb on - strandat 95.651 kb on + strandat 95.651 kb on + strandat 95.651 kb on + strandat 95.651 kb on + strandat 95.651 kb on + strandat 95.651 kb on + strandat 95.652 kb on - strandat 95.652 kb on - strandat 95.714 kb on + strandat 95.714 kb on + strandat 95.714 kb on + strandat 95.714 kb on + strandat 95.715 kb on - strandat 95.741 kb on + strandat 95.741 kb on + strandat 95.741 kb on + strandat 95.742 kb on - strandat 95.742 kb on - strandat 95.742 kb on - strandat 95.742 kb on - strandat 95.754 kb on + strandat 95.754 kb on + strandat 95.755 kb on - strandat 95.755 kb on - strandat 95.797 kb on + strand, within PP_0088at 95.798 kb on - strand, within PP_0088at 95.798 kb on - strand, within PP_0088at 95.798 kb on - strand, within PP_0088at 95.809 kb on + strand, within PP_0088at 95.810 kb on - strand, within PP_0088at 95.810 kb on - strand, within PP_0088at 95.955 kb on - strand, within PP_0088at 95.973 kb on - strand, within PP_0088at 95.973 kb on - strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.026 kb on + strand, within PP_0088at 96.093 kb on - strand, within PP_0088at 96.123 kb on - strand, within PP_0088at 96.200 kb on + strand, within PP_0088at 96.249 kb on - strand, within PP_0088at 96.317 kb on + strand, within PP_0088at 96.317 kb on + strand, within PP_0088at 96.318 kb on - strand, within PP_0088at 96.318 kb on - strand, within PP_0088at 96.462 kb on + strand, within PP_0088at 96.462 kb on + strandat 96.463 kb on - strand, within PP_0088at 96.463 kb on - strand, within PP_0088at 96.486 kb on - strand, within PP_0088

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Per-strain Table

Position Strand Gene LocusTag Fraction Formaldehyde 0.03125 vol%
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94,358 + PP_0084 0.73 +0.2
94,358 + PP_0084 0.73 -0.5
94,358 + PP_0084 0.73 +0.5
94,382 + PP_0084 0.76 +0.6
94,383 - PP_0084 0.76 +0.4
94,383 - PP_0084 0.76 -0.1
94,383 - PP_0084 0.76 +0.0
94,383 - PP_0084 0.76 +0.2
94,383 - PP_0084 0.76 +0.7
94,383 - PP_0084 0.76 +0.9
94,385 + PP_0084 0.76 +0.1
94,386 - PP_0084 0.76 +0.2
94,386 - PP_0084 0.76 +0.1
94,386 - PP_0084 0.76 +0.6
94,386 - PP_0084 0.76 -0.3
94,495 + PP_0084 0.88 +0.1
94,496 - PP_0084 0.88 -0.7
94,599 - -0.7
94,612 + -0.1
94,613 - +1.0
94,619 + -1.5
94,667 + PP_0085 0.14 -0.8
94,667 + PP_0085 0.14 +1.1
94,667 + PP_0085 0.14 +0.1
94,667 + PP_0085 0.14 -0.2
94,668 - PP_0085 0.15 -0.2
94,668 - PP_0085 0.15 +0.1
94,736 + PP_0085 0.28 +0.2
94,737 - PP_0085 0.29 +1.4
94,750 + PP_0085 0.31 +0.0
94,900 - PP_0085 0.62 -0.5
94,900 - PP_0085 0.62 +1.2
94,939 + PP_0085 0.70 -1.4
94,940 - PP_0085 0.70 -1.0
94,940 - PP_0085 0.70 -1.4
95,016 + PP_0085 0.86 +0.6
95,017 - PP_0085 0.86 -0.5
95,035 + PP_0085 0.90 -2.2
95,036 - PP_0085 0.90 -0.4
95,089 + +1.7
95,090 - +0.9
95,142 + PP_0086 0.33 +0.6
95,142 + PP_0086 0.33 -0.7
95,142 + PP_0086 0.33 +0.6
95,280 + -0.2
95,280 + -0.9
95,280 + +1.2
95,302 + +0.8
95,303 - +1.8
95,303 - -0.9
95,303 - -0.1
95,303 - -0.0
95,303 - +0.1
95,323 + +0.4
95,324 - +0.8
95,514 - PP_0087 0.64 -1.0
95,563 + PP_0087 0.83 -0.3
95,563 + PP_0087 0.83 -1.0
95,564 - PP_0087 0.83 -1.1
95,606 + +1.0
95,607 - -0.4
95,651 + +0.1
95,651 + -0.8
95,651 + +0.1
95,651 + -0.3
95,651 + +0.2
95,651 + +0.1
95,652 - -2.3
95,652 - +1.2
95,714 + +0.5
95,714 + +0.8
95,714 + +0.7
95,714 + +0.4
95,715 - +0.4
95,741 + -0.1
95,741 + -0.8
95,741 + -0.5
95,742 - +0.4
95,742 - +0.8
95,742 - -1.0
95,742 - +0.5
95,754 + +0.5
95,754 + +0.7
95,755 - +0.1
95,755 - +0.0
95,797 + PP_0088 0.12 +0.6
95,798 - PP_0088 0.12 -1.5
95,798 - PP_0088 0.12 +0.2
95,798 - PP_0088 0.12 +1.8
95,809 + PP_0088 0.13 +1.0
95,810 - PP_0088 0.13 -1.1
95,810 - PP_0088 0.13 +0.2
95,955 - PP_0088 0.27 -0.3
95,973 - PP_0088 0.29 +0.6
95,973 - PP_0088 0.29 -0.3
96,026 + PP_0088 0.34 -0.4
96,026 + PP_0088 0.34 +0.1
96,026 + PP_0088 0.34 +1.9
96,026 + PP_0088 0.34 +0.3
96,026 + PP_0088 0.34 -0.1
96,093 - PP_0088 0.41 +0.2
96,123 - PP_0088 0.44 -1.1
96,200 + PP_0088 0.52 -0.6
96,249 - PP_0088 0.57 +0.4
96,317 + PP_0088 0.63 -0.0
96,317 + PP_0088 0.63 -0.1
96,318 - PP_0088 0.63 -0.7
96,318 - PP_0088 0.63 -0.8
96,462 + PP_0088 0.78 -0.1
96,462 + +0.8
96,463 - PP_0088 0.78 -0.2
96,463 - PP_0088 0.78 +0.9
96,486 - PP_0088 0.80 -0.1

Or see this region's nucleotide sequence