Experiment: R2A with sodium fluoride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0965 and Atu0966 overlap by 4 nucleotides Atu0966 and Atu0967 are separated by 17 nucleotides Atu0967 and Atu0968 are separated by 1 nucleotides Atu0968 and Atu8142 are separated by 139 nucleotides Atu8142 and Atu0970 are separated by 93 nucleotides
Atu0965: Atu0965 - hypothetical protein, at 952,990 to 953,874
Atu0965
Atu0966: Atu0966 - hypothetical protein, at 953,871 to 954,305
Atu0966
Atu0967: Atu0967 - hypothetical protein, at 954,323 to 958,123
Atu0967
Atu0968: Atu0968 - hypothetical protein, at 958,125 to 958,364
Atu0968
Atu8142: Atu8142 - hypothetical protein, at 958,504 to 958,758
Atu8142
Atu0970: Atu0970 - two component response regulator, at 958,852 to 959,523
Atu0970
Position (kb) 954
955
956
957
958
959 Strain fitness (log2 ratio) -1
0
1 at 953.328 kb on - strand, within Atu0965 at 953.390 kb on + strand, within Atu0965 at 953.393 kb on - strand, within Atu0965 at 953.398 kb on - strand, within Atu0965 at 953.398 kb on - strand, within Atu0965 at 953.402 kb on + strand, within Atu0965 at 953.410 kb on - strand, within Atu0965 at 953.426 kb on - strand, within Atu0965 at 953.426 kb on - strand, within Atu0965 at 953.489 kb on + strand, within Atu0965 at 953.586 kb on + strand, within Atu0965 at 953.799 kb on + strand at 953.900 kb on - strand at 954.128 kb on + strand, within Atu0966 at 954.136 kb on - strand, within Atu0966 at 954.217 kb on + strand, within Atu0966 at 954.433 kb on - strand at 954.450 kb on - strand at 954.468 kb on - strand at 954.475 kb on + strand at 954.475 kb on + strand at 954.475 kb on + strand at 954.552 kb on - strand at 954.559 kb on + strand at 954.559 kb on + strand at 954.559 kb on + strand at 954.563 kb on - strand at 954.567 kb on - strand at 954.593 kb on - strand at 954.601 kb on - strand at 954.613 kb on + strand at 954.624 kb on + strand at 954.632 kb on - strand at 954.771 kb on + strand, within Atu0967 at 954.803 kb on - strand, within Atu0967 at 954.838 kb on + strand, within Atu0967 at 954.838 kb on + strand, within Atu0967 at 954.903 kb on - strand, within Atu0967 at 954.935 kb on + strand, within Atu0967 at 954.935 kb on + strand, within Atu0967 at 954.988 kb on - strand, within Atu0967 at 955.000 kb on - strand, within Atu0967 at 955.027 kb on - strand, within Atu0967 at 955.027 kb on - strand, within Atu0967 at 955.109 kb on - strand, within Atu0967 at 955.137 kb on + strand, within Atu0967 at 955.211 kb on + strand, within Atu0967 at 955.280 kb on - strand, within Atu0967 at 955.291 kb on - strand, within Atu0967 at 955.299 kb on - strand, within Atu0967 at 955.359 kb on + strand, within Atu0967 at 955.359 kb on + strand, within Atu0967 at 955.359 kb on + strand, within Atu0967 at 955.359 kb on + strand, within Atu0967 at 955.360 kb on + strand, within Atu0967 at 955.385 kb on - strand, within Atu0967 at 955.506 kb on - strand, within Atu0967 at 955.565 kb on + strand, within Atu0967 at 955.565 kb on + strand, within Atu0967 at 955.565 kb on + strand, within Atu0967 at 955.565 kb on + strand, within Atu0967 at 955.573 kb on - strand, within Atu0967 at 955.573 kb on - strand, within Atu0967 at 955.573 kb on - strand, within Atu0967 at 955.603 kb on + strand, within Atu0967 at 955.603 kb on + strand, within Atu0967 at 955.623 kb on + strand, within Atu0967 at 955.623 kb on + strand, within Atu0967 at 955.623 kb on + strand, within Atu0967 at 955.636 kb on - strand, within Atu0967 at 955.638 kb on + strand, within Atu0967 at 955.667 kb on + strand, within Atu0967 at 955.668 kb on - strand, within Atu0967 at 955.767 kb on - strand, within Atu0967 at 955.791 kb on - strand, within Atu0967 at 955.827 kb on + strand, within Atu0967 at 955.969 kb on + strand, within Atu0967 at 955.985 kb on - strand, within Atu0967 at 955.986 kb on + strand, within Atu0967 at 955.995 kb on - strand, within Atu0967 at 956.015 kb on + strand, within Atu0967 at 956.109 kb on + strand, within Atu0967 at 956.132 kb on - strand, within Atu0967 at 956.169 kb on - strand, within Atu0967 at 956.341 kb on + strand, within Atu0967 at 956.386 kb on - strand, within Atu0967 at 956.393 kb on - strand, within Atu0967 at 956.417 kb on - strand, within Atu0967 at 956.422 kb on - strand, within Atu0967 at 956.429 kb on + strand, within Atu0967 at 956.516 kb on + strand, within Atu0967 at 956.519 kb on - strand, within Atu0967 at 956.525 kb on + strand, within Atu0967 at 956.585 kb on - strand, within Atu0967 at 956.585 kb on - strand, within Atu0967 at 956.669 kb on - strand, within Atu0967 at 956.669 kb on - strand, within Atu0967 at 956.916 kb on + strand, within Atu0967 at 957.060 kb on - strand, within Atu0967 at 957.086 kb on - strand, within Atu0967 at 957.107 kb on + strand, within Atu0967 at 957.133 kb on - strand, within Atu0967 at 957.145 kb on + strand, within Atu0967 at 957.166 kb on + strand, within Atu0967 at 957.344 kb on + strand, within Atu0967 at 957.464 kb on + strand, within Atu0967 at 957.488 kb on + strand, within Atu0967 at 957.645 kb on + strand, within Atu0967 at 957.726 kb on - strand, within Atu0967 at 957.804 kb on - strand at 957.843 kb on + strand at 957.851 kb on - strand at 957.863 kb on + strand at 957.870 kb on + strand at 957.896 kb on - strand at 957.944 kb on + strand at 957.952 kb on + strand at 957.969 kb on + strand at 957.980 kb on - strand at 958.002 kb on + strand at 958.072 kb on + strand at 958.163 kb on - strand, within Atu0968 at 958.163 kb on - strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.174 kb on - strand, within Atu0968 at 958.178 kb on + strand, within Atu0968 at 958.179 kb on + strand, within Atu0968 at 958.235 kb on - strand, within Atu0968 at 958.260 kb on + strand, within Atu0968 at 958.260 kb on + strand, within Atu0968 at 958.284 kb on + strand, within Atu0968 at 958.287 kb on - strand, within Atu0968 at 958.289 kb on + strand, within Atu0968 at 958.297 kb on - strand, within Atu0968 at 958.326 kb on + strand, within Atu0968 at 958.326 kb on + strand, within Atu0968 at 958.334 kb on - strand, within Atu0968 at 958.345 kb on - strand at 958.867 kb on + strand at 959.105 kb on - strand, within Atu0970
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium fluoride 0.2 mM remove 953,328 - Atu0965 0.38 -0.5 953,390 + Atu0965 0.45 +0.1 953,393 - Atu0965 0.46 +1.1 953,398 - Atu0965 0.46 -1.2 953,398 - Atu0965 0.46 -0.8 953,402 + Atu0965 0.47 +0.3 953,410 - Atu0965 0.47 -0.1 953,426 - Atu0965 0.49 -0.1 953,426 - Atu0965 0.49 +0.3 953,489 + Atu0965 0.56 +0.4 953,586 + Atu0965 0.67 -0.1 953,799 + +1.3 953,900 - +0.2 954,128 + Atu0966 0.59 +0.3 954,136 - Atu0966 0.61 +0.6 954,217 + Atu0966 0.80 +1.2 954,433 - +0.6 954,450 - -0.2 954,468 - +1.2 954,475 + +0.3 954,475 + +0.0 954,475 + +1.0 954,552 - -0.0 954,559 + +0.2 954,559 + -0.1 954,559 + +0.5 954,563 - -0.6 954,567 - -0.4 954,593 - -0.2 954,601 - -0.3 954,613 + +0.3 954,624 + -0.8 954,632 - +0.4 954,771 + Atu0967 0.12 +0.0 954,803 - Atu0967 0.13 -0.3 954,838 + Atu0967 0.14 +0.7 954,838 + Atu0967 0.14 +0.3 954,903 - Atu0967 0.15 +0.3 954,935 + Atu0967 0.16 +0.0 954,935 + Atu0967 0.16 -0.3 954,988 - Atu0967 0.17 -1.3 955,000 - Atu0967 0.18 -0.2 955,027 - Atu0967 0.19 -0.1 955,027 - Atu0967 0.19 -0.1 955,109 - Atu0967 0.21 +0.0 955,137 + Atu0967 0.21 +1.0 955,211 + Atu0967 0.23 -0.6 955,280 - Atu0967 0.25 +0.6 955,291 - Atu0967 0.25 +0.4 955,299 - Atu0967 0.26 -0.1 955,359 + Atu0967 0.27 +0.8 955,359 + Atu0967 0.27 +0.4 955,359 + Atu0967 0.27 +0.1 955,359 + Atu0967 0.27 -0.2 955,360 + Atu0967 0.27 +0.0 955,385 - Atu0967 0.28 +0.9 955,506 - Atu0967 0.31 -1.6 955,565 + Atu0967 0.33 +0.2 955,565 + Atu0967 0.33 +0.1 955,565 + Atu0967 0.33 -0.3 955,565 + Atu0967 0.33 +0.7 955,573 - Atu0967 0.33 -0.5 955,573 - Atu0967 0.33 +0.0 955,573 - Atu0967 0.33 +0.5 955,603 + Atu0967 0.34 +0.1 955,603 + Atu0967 0.34 -0.1 955,623 + Atu0967 0.34 -0.6 955,623 + Atu0967 0.34 -0.6 955,623 + Atu0967 0.34 +0.2 955,636 - Atu0967 0.35 -1.1 955,638 + Atu0967 0.35 -0.4 955,667 + Atu0967 0.35 -0.2 955,668 - Atu0967 0.35 +1.1 955,767 - Atu0967 0.38 +0.3 955,791 - Atu0967 0.39 -0.3 955,827 + Atu0967 0.40 +0.3 955,969 + Atu0967 0.43 +0.3 955,985 - Atu0967 0.44 -0.6 955,986 + Atu0967 0.44 +1.0 955,995 - Atu0967 0.44 +1.2 956,015 + Atu0967 0.45 -0.4 956,109 + Atu0967 0.47 -0.2 956,132 - Atu0967 0.48 +0.0 956,169 - Atu0967 0.49 +0.7 956,341 + Atu0967 0.53 +0.1 956,386 - Atu0967 0.54 -0.3 956,393 - Atu0967 0.54 -0.7 956,417 - Atu0967 0.55 +0.2 956,422 - Atu0967 0.55 -0.3 956,429 + Atu0967 0.55 +0.6 956,516 + Atu0967 0.58 -0.1 956,519 - Atu0967 0.58 +0.3 956,525 + Atu0967 0.58 -0.8 956,585 - Atu0967 0.60 -0.1 956,585 - Atu0967 0.60 +0.2 956,669 - Atu0967 0.62 -0.1 956,669 - Atu0967 0.62 +0.0 956,916 + Atu0967 0.68 -0.0 957,060 - Atu0967 0.72 +1.4 957,086 - Atu0967 0.73 -0.2 957,107 + Atu0967 0.73 -0.9 957,133 - Atu0967 0.74 +1.3 957,145 + Atu0967 0.74 -1.4 957,166 + Atu0967 0.75 -0.2 957,344 + Atu0967 0.79 +0.1 957,464 + Atu0967 0.83 -0.0 957,488 + Atu0967 0.83 +0.4 957,645 + Atu0967 0.87 -0.1 957,726 - Atu0967 0.90 +0.4 957,804 - +0.1 957,843 + +0.5 957,851 - +0.3 957,863 + +0.0 957,870 + +0.4 957,896 - -0.3 957,944 + -0.4 957,952 + -0.1 957,969 + +0.3 957,980 - -0.0 958,002 + -0.7 958,072 + -0.0 958,163 - Atu0968 0.16 +0.9 958,163 - Atu0968 0.16 +0.0 958,165 + Atu0968 0.17 -1.1 958,165 + Atu0968 0.17 +0.1 958,165 + Atu0968 0.17 -0.3 958,174 - Atu0968 0.20 -0.8 958,178 + Atu0968 0.22 -0.9 958,179 + Atu0968 0.23 +0.3 958,235 - Atu0968 0.46 -1.7 958,260 + Atu0968 0.56 -0.5 958,260 + Atu0968 0.56 +1.0 958,284 + Atu0968 0.66 +0.4 958,287 - Atu0968 0.68 -0.4 958,289 + Atu0968 0.68 -0.9 958,297 - Atu0968 0.72 -0.3 958,326 + Atu0968 0.84 +0.6 958,326 + Atu0968 0.84 +0.9 958,334 - Atu0968 0.87 -0.1 958,345 - -0.7 958,867 + -0.9 959,105 - Atu0970 0.38 -0.2
Or see this region's nucleotide sequence