Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4753 and Psyr_4754 overlap by 1 nucleotides Psyr_4754 and Psyr_4755 are separated by 267 nucleotides
Psyr_4753: Psyr_4753 - Insulinase-like:Peptidase M16, C-terminal, at 5,629,557 to 5,631,047
_4753
Psyr_4754: Psyr_4754 - 16S rRNA m(2)G-966 methyltransferase, at 5,631,047 to 5,631,637
_4754
Psyr_4755: Psyr_4755 - hydrolase, alpha/beta fold family, at 5,631,905 to 5,632,939
_4755
Position (kb) 5631
5632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5630.287 kb on - strand, within Psyr_4753 at 5630.509 kb on - strand, within Psyr_4753 at 5630.602 kb on - strand, within Psyr_4753 at 5630.844 kb on + strand, within Psyr_4753 at 5630.844 kb on + strand, within Psyr_4753 at 5630.844 kb on + strand, within Psyr_4753 at 5630.844 kb on + strand, within Psyr_4753 at 5630.845 kb on - strand, within Psyr_4753 at 5630.845 kb on - strand, within Psyr_4753 at 5630.862 kb on + strand, within Psyr_4753 at 5630.862 kb on + strand, within Psyr_4753 at 5630.862 kb on + strand, within Psyr_4753 at 5630.863 kb on - strand, within Psyr_4753 at 5630.863 kb on - strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.875 kb on - strand, within Psyr_4753 at 5630.875 kb on - strand, within Psyr_4753 at 5631.203 kb on + strand, within Psyr_4754 at 5631.203 kb on + strand, within Psyr_4754 at 5631.203 kb on + strand, within Psyr_4754 at 5631.204 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.609 kb on - strand at 5631.609 kb on - strand at 5631.648 kb on - strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.743 kb on + strand at 5631.743 kb on + strand at 5631.744 kb on - strand at 5631.744 kb on - strand at 5631.744 kb on - strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.855 kb on + strand at 5631.855 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.868 kb on + strand at 5631.869 kb on - strand at 5631.919 kb on + strand at 5632.116 kb on + strand, within Psyr_4755 at 5632.116 kb on + strand, within Psyr_4755 at 5632.151 kb on + strand, within Psyr_4755 at 5632.151 kb on + strand, within Psyr_4755 at 5632.152 kb on - strand, within Psyr_4755 at 5632.253 kb on + strand, within Psyr_4755 at 5632.254 kb on - strand, within Psyr_4755 at 5632.329 kb on - strand, within Psyr_4755 at 5632.329 kb on - strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.516 kb on + strand, within Psyr_4755
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 5,630,287 - Psyr_4753 0.49 -0.3 5,630,509 - Psyr_4753 0.64 -0.7 5,630,602 - Psyr_4753 0.70 -1.3 5,630,844 + Psyr_4753 0.86 +1.2 5,630,844 + Psyr_4753 0.86 -0.9 5,630,844 + Psyr_4753 0.86 -0.7 5,630,844 + Psyr_4753 0.86 -0.4 5,630,845 - Psyr_4753 0.86 -1.9 5,630,845 - Psyr_4753 0.86 -0.7 5,630,862 + Psyr_4753 0.88 +1.4 5,630,862 + Psyr_4753 0.88 -0.6 5,630,862 + Psyr_4753 0.88 +1.2 5,630,863 - Psyr_4753 0.88 +0.6 5,630,863 - Psyr_4753 0.88 -1.2 5,630,874 + Psyr_4753 0.88 -0.9 5,630,874 + Psyr_4753 0.88 -0.2 5,630,874 + Psyr_4753 0.88 +0.0 5,630,874 + Psyr_4753 0.88 -0.5 5,630,874 + Psyr_4753 0.88 +0.3 5,630,874 + Psyr_4753 0.88 +1.1 5,630,874 + Psyr_4753 0.88 -0.2 5,630,874 + Psyr_4753 0.88 +0.0 5,630,874 + Psyr_4753 0.88 +0.5 5,630,874 + Psyr_4753 0.88 -1.0 5,630,875 - Psyr_4753 0.88 -0.9 5,630,875 - Psyr_4753 0.88 -0.8 5,631,203 + Psyr_4754 0.26 -1.0 5,631,203 + Psyr_4754 0.26 -0.1 5,631,203 + Psyr_4754 0.26 -2.8 5,631,204 - Psyr_4754 0.27 -1.3 5,631,522 - Psyr_4754 0.80 +1.0 5,631,605 + -0.9 5,631,605 + +0.8 5,631,605 + -1.0 5,631,605 + +0.2 5,631,606 - -1.7 5,631,606 - +0.0 5,631,606 - -0.4 5,631,606 - -0.6 5,631,606 - +0.7 5,631,606 - +2.0 5,631,609 - +0.0 5,631,609 - -1.0 5,631,648 - +0.1 5,631,739 + -0.8 5,631,739 + +0.8 5,631,739 + +0.8 5,631,739 + +1.0 5,631,739 + -1.4 5,631,739 + -0.6 5,631,740 - -1.7 5,631,740 - -0.7 5,631,740 - -0.1 5,631,743 + -0.7 5,631,743 + -0.1 5,631,744 - +1.4 5,631,744 - -1.1 5,631,744 - -0.2 5,631,818 + +0.1 5,631,818 + -0.7 5,631,818 + +1.3 5,631,819 - +0.1 5,631,819 - +0.4 5,631,819 - +2.0 5,631,819 - -0.6 5,631,839 + +1.0 5,631,839 + -1.6 5,631,839 + +0.4 5,631,840 - +0.1 5,631,840 - -1.6 5,631,840 - +0.8 5,631,855 + -0.2 5,631,855 + +0.5 5,631,866 + -1.6 5,631,866 + +0.1 5,631,866 + -1.6 5,631,866 + +0.3 5,631,866 + +1.0 5,631,866 + +0.6 5,631,866 + +0.6 5,631,866 + +1.3 5,631,866 + -0.4 5,631,866 + +0.2 5,631,866 + +1.0 5,631,867 - +0.3 5,631,867 - -0.5 5,631,867 - +0.9 5,631,867 - -1.6 5,631,867 - -0.3 5,631,867 - +0.4 5,631,867 - -0.6 5,631,867 - -0.2 5,631,867 - -0.2 5,631,867 - +0.2 5,631,867 - +0.5 5,631,868 + +0.2 5,631,869 - +0.0 5,631,919 + +0.7 5,632,116 + Psyr_4755 0.20 +0.4 5,632,116 + Psyr_4755 0.20 -0.9 5,632,151 + Psyr_4755 0.24 -0.4 5,632,151 + Psyr_4755 0.24 +0.3 5,632,152 - Psyr_4755 0.24 -0.1 5,632,253 + Psyr_4755 0.34 -1.6 5,632,254 - Psyr_4755 0.34 -0.3 5,632,329 - Psyr_4755 0.41 +0.3 5,632,329 - Psyr_4755 0.41 +0.1 5,632,370 + Psyr_4755 0.45 +0.4 5,632,370 + Psyr_4755 0.45 +2.0 5,632,370 + Psyr_4755 0.45 -1.0 5,632,370 + Psyr_4755 0.45 +0.1 5,632,514 + Psyr_4755 0.59 +0.0 5,632,514 + Psyr_4755 0.59 +0.8 5,632,514 + Psyr_4755 0.59 -0.2 5,632,514 + Psyr_4755 0.59 -0.1 5,632,514 + Psyr_4755 0.59 +0.6 5,632,514 + Psyr_4755 0.59 -0.2 5,632,514 + Psyr_4755 0.59 +0.2 5,632,514 + Psyr_4755 0.59 +0.6 5,632,514 + Psyr_4755 0.59 -0.1 5,632,514 + Psyr_4755 0.59 -0.4 5,632,514 + Psyr_4755 0.59 +0.8 5,632,515 - Psyr_4755 0.59 +0.6 5,632,515 - Psyr_4755 0.59 -0.3 5,632,515 - Psyr_4755 0.59 -0.6 5,632,515 - Psyr_4755 0.59 +0.3 5,632,515 - Psyr_4755 0.59 -1.7 5,632,515 - Psyr_4755 0.59 +0.0 5,632,516 + Psyr_4755 0.59 -0.2
Or see this region's nucleotide sequence