Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4715

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4713 and Psyr_4714 are separated by 15 nucleotidesPsyr_4714 and Psyr_4715 overlap by 4 nucleotidesPsyr_4715 and Psyr_4716 are separated by 50 nucleotidesPsyr_4716 and Psyr_4717 are separated by 277 nucleotides Psyr_4713: Psyr_4713 - Sarcosine oxidase, beta subunit, heterotetrameric, at 5,584,702 to 5,585,952 _4713 Psyr_4714: Psyr_4714 - Sarcosine oxidase, delta subunit, heterotetrameric, at 5,585,968 to 5,586,264 _4714 Psyr_4715: Psyr_4715 - Sarcosine oxidase, alpha subunit, heterotetrameric, at 5,586,261 to 5,589,281 _4715 Psyr_4716: Psyr_4716 - Sarcosine oxidase, gamma subunit, heterotetrameric, at 5,589,332 to 5,589,964 _4716 Psyr_4717: Psyr_4717 - formyltetrahydrofolate deformylase, at 5,590,242 to 5,591,099 _4717 Position (kb) 5586 5587 5588 5589 5590Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5585.548 kb on + strand, within Psyr_4713at 5585.548 kb on + strand, within Psyr_4713at 5585.548 kb on + strand, within Psyr_4713at 5585.549 kb on - strand, within Psyr_4713at 5585.549 kb on - strand, within Psyr_4713at 5585.976 kb on + strandat 5585.976 kb on + strandat 5585.976 kb on + strandat 5585.977 kb on - strandat 5585.977 kb on - strandat 5585.977 kb on - strandat 5585.977 kb on - strandat 5585.977 kb on - strandat 5586.094 kb on + strand, within Psyr_4714at 5586.094 kb on + strand, within Psyr_4714at 5586.094 kb on + strand, within Psyr_4714at 5586.094 kb on + strand, within Psyr_4714at 5586.094 kb on + strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.166 kb on + strand, within Psyr_4714at 5586.260 kb on + strandat 5586.260 kb on + strandat 5586.323 kb on + strandat 5586.342 kb on + strandat 5586.343 kb on - strandat 5586.343 kb on - strandat 5586.343 kb on - strandat 5586.420 kb on + strandat 5586.421 kb on - strandat 5586.421 kb on - strandat 5586.537 kb on + strandat 5586.537 kb on + strandat 5586.642 kb on + strand, within Psyr_4715at 5586.643 kb on - strand, within Psyr_4715at 5586.643 kb on - strand, within Psyr_4715at 5586.645 kb on + strand, within Psyr_4715at 5586.645 kb on + strand, within Psyr_4715at 5586.645 kb on + strand, within Psyr_4715at 5586.660 kb on + strand, within Psyr_4715at 5586.661 kb on - strand, within Psyr_4715at 5586.684 kb on + strand, within Psyr_4715at 5586.684 kb on + strand, within Psyr_4715at 5586.685 kb on - strand, within Psyr_4715at 5586.693 kb on + strand, within Psyr_4715at 5586.693 kb on + strand, within Psyr_4715at 5586.693 kb on + strand, within Psyr_4715at 5586.693 kb on + strand, within Psyr_4715at 5586.693 kb on + strand, within Psyr_4715at 5586.693 kb on + strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.750 kb on + strand, within Psyr_4715at 5586.750 kb on + strand, within Psyr_4715at 5586.750 kb on + strand, within Psyr_4715at 5586.751 kb on - strand, within Psyr_4715at 5586.751 kb on - strand, within Psyr_4715at 5587.016 kb on + strand, within Psyr_4715at 5587.017 kb on - strand, within Psyr_4715at 5587.017 kb on - strand, within Psyr_4715at 5587.017 kb on - strand, within Psyr_4715at 5587.133 kb on + strand, within Psyr_4715at 5587.156 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.219 kb on - strand, within Psyr_4715at 5587.337 kb on + strand, within Psyr_4715at 5587.603 kb on + strand, within Psyr_4715at 5587.628 kb on + strand, within Psyr_4715at 5587.656 kb on + strand, within Psyr_4715at 5587.656 kb on + strand, within Psyr_4715at 5587.920 kb on + strand, within Psyr_4715at 5587.921 kb on - strand, within Psyr_4715at 5588.043 kb on + strand, within Psyr_4715at 5588.043 kb on + strand, within Psyr_4715at 5588.184 kb on + strand, within Psyr_4715at 5588.184 kb on + strand, within Psyr_4715at 5588.184 kb on + strand, within Psyr_4715at 5588.184 kb on + strand, within Psyr_4715at 5588.185 kb on - strand, within Psyr_4715at 5588.331 kb on + strand, within Psyr_4715at 5588.331 kb on + strand, within Psyr_4715at 5588.331 kb on + strand, within Psyr_4715at 5588.331 kb on + strand, within Psyr_4715at 5588.332 kb on - strand, within Psyr_4715at 5588.332 kb on - strand, within Psyr_4715at 5588.332 kb on - strand, within Psyr_4715at 5588.332 kb on - strand, within Psyr_4715at 5588.373 kb on + strand, within Psyr_4715at 5588.502 kb on + strand, within Psyr_4715at 5588.502 kb on + strand, within Psyr_4715at 5588.536 kb on - strand, within Psyr_4715at 5588.536 kb on - strand, within Psyr_4715at 5588.724 kb on + strand, within Psyr_4715at 5588.725 kb on - strand, within Psyr_4715at 5588.793 kb on + strand, within Psyr_4715at 5588.794 kb on - strand, within Psyr_4715at 5589.111 kb on + strandat 5589.112 kb on - strandat 5589.174 kb on - strandat 5589.280 kb on - strandat 5589.664 kb on - strand, within Psyr_4716at 5589.756 kb on + strand, within Psyr_4716at 5589.776 kb on + strand, within Psyr_4716at 5589.776 kb on + strand, within Psyr_4716at 5589.776 kb on + strand, within Psyr_4716at 5589.776 kb on + strand, within Psyr_4716at 5589.776 kb on + strand, within Psyr_4716at 5589.776 kb on + strand, within Psyr_4716at 5589.777 kb on - strand, within Psyr_4716at 5589.985 kb on - strandat 5590.015 kb on + strandat 5590.016 kb on - strandat 5590.016 kb on - strandat 5590.016 kb on - strandat 5590.016 kb on - strandat 5590.016 kb on - strandat 5590.083 kb on - strandat 5590.158 kb on - strandat 5590.225 kb on - strandat 5590.241 kb on + strandat 5590.242 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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5,585,548 + Psyr_4713 0.68 -0.3
5,585,548 + Psyr_4713 0.68 +0.5
5,585,548 + Psyr_4713 0.68 -1.2
5,585,549 - Psyr_4713 0.68 -0.7
5,585,549 - Psyr_4713 0.68 +0.7
5,585,976 + -0.6
5,585,976 + +0.6
5,585,976 + -0.0
5,585,977 - -1.3
5,585,977 - -0.0
5,585,977 - +3.3
5,585,977 - +0.8
5,585,977 - -0.5
5,586,094 + Psyr_4714 0.42 -0.3
5,586,094 + Psyr_4714 0.42 -1.4
5,586,094 + Psyr_4714 0.42 +2.8
5,586,094 + Psyr_4714 0.42 -0.2
5,586,094 + Psyr_4714 0.42 -0.2
5,586,095 - Psyr_4714 0.43 +0.2
5,586,095 - Psyr_4714 0.43 -2.0
5,586,095 - Psyr_4714 0.43 -0.1
5,586,095 - Psyr_4714 0.43 +0.7
5,586,095 - Psyr_4714 0.43 +0.3
5,586,095 - Psyr_4714 0.43 +0.4
5,586,095 - Psyr_4714 0.43 -0.7
5,586,166 + Psyr_4714 0.67 -0.2
5,586,260 + +0.1
5,586,260 + +0.6
5,586,323 + -0.7
5,586,342 + -0.5
5,586,343 - +0.2
5,586,343 - -0.3
5,586,343 - -0.5
5,586,420 + +0.4
5,586,421 - -0.0
5,586,421 - -0.3
5,586,537 + -1.4
5,586,537 + -0.4
5,586,642 + Psyr_4715 0.13 +0.3
5,586,643 - Psyr_4715 0.13 +0.5
5,586,643 - Psyr_4715 0.13 +1.1
5,586,645 + Psyr_4715 0.13 -1.0
5,586,645 + Psyr_4715 0.13 -0.6
5,586,645 + Psyr_4715 0.13 +0.5
5,586,660 + Psyr_4715 0.13 +0.0
5,586,661 - Psyr_4715 0.13 -1.4
5,586,684 + Psyr_4715 0.14 -1.0
5,586,684 + Psyr_4715 0.14 -1.1
5,586,685 - Psyr_4715 0.14 +0.6
5,586,693 + Psyr_4715 0.14 -0.0
5,586,693 + Psyr_4715 0.14 -0.4
5,586,693 + Psyr_4715 0.14 +0.1
5,586,693 + Psyr_4715 0.14 +0.3
5,586,693 + Psyr_4715 0.14 +0.4
5,586,693 + Psyr_4715 0.14 +0.1
5,586,694 - Psyr_4715 0.14 -0.5
5,586,694 - Psyr_4715 0.14 -0.4
5,586,694 - Psyr_4715 0.14 -0.5
5,586,694 - Psyr_4715 0.14 -0.1
5,586,694 - Psyr_4715 0.14 +0.3
5,586,694 - Psyr_4715 0.14 -0.6
5,586,750 + Psyr_4715 0.16 -0.4
5,586,750 + Psyr_4715 0.16 -1.4
5,586,750 + Psyr_4715 0.16 -0.2
5,586,751 - Psyr_4715 0.16 +0.3
5,586,751 - Psyr_4715 0.16 +0.2
5,587,016 + Psyr_4715 0.25 -0.2
5,587,017 - Psyr_4715 0.25 -0.5
5,587,017 - Psyr_4715 0.25 -0.2
5,587,017 - Psyr_4715 0.25 +0.5
5,587,133 + Psyr_4715 0.29 -0.6
5,587,156 - Psyr_4715 0.30 +0.0
5,587,207 - Psyr_4715 0.31 +1.5
5,587,207 - Psyr_4715 0.31 +2.0
5,587,207 - Psyr_4715 0.31 -0.8
5,587,207 - Psyr_4715 0.31 +0.1
5,587,207 - Psyr_4715 0.31 -0.6
5,587,207 - Psyr_4715 0.31 -0.3
5,587,219 - Psyr_4715 0.32 +0.1
5,587,337 + Psyr_4715 0.36 -0.9
5,587,603 + Psyr_4715 0.44 -0.1
5,587,628 + Psyr_4715 0.45 -0.1
5,587,656 + Psyr_4715 0.46 -1.6
5,587,656 + Psyr_4715 0.46 +0.3
5,587,920 + Psyr_4715 0.55 -0.9
5,587,921 - Psyr_4715 0.55 +1.1
5,588,043 + Psyr_4715 0.59 +1.7
5,588,043 + Psyr_4715 0.59 -0.2
5,588,184 + Psyr_4715 0.64 +2.1
5,588,184 + Psyr_4715 0.64 +0.1
5,588,184 + Psyr_4715 0.64 -0.0
5,588,184 + Psyr_4715 0.64 -1.1
5,588,185 - Psyr_4715 0.64 -1.1
5,588,331 + Psyr_4715 0.69 +0.0
5,588,331 + Psyr_4715 0.69 +0.6
5,588,331 + Psyr_4715 0.69 -2.8
5,588,331 + Psyr_4715 0.69 -0.3
5,588,332 - Psyr_4715 0.69 +0.6
5,588,332 - Psyr_4715 0.69 -0.4
5,588,332 - Psyr_4715 0.69 +0.1
5,588,332 - Psyr_4715 0.69 +0.4
5,588,373 + Psyr_4715 0.70 -1.9
5,588,502 + Psyr_4715 0.74 +2.6
5,588,502 + Psyr_4715 0.74 -3.5
5,588,536 - Psyr_4715 0.75 -0.7
5,588,536 - Psyr_4715 0.75 +2.1
5,588,724 + Psyr_4715 0.82 +0.3
5,588,725 - Psyr_4715 0.82 -1.0
5,588,793 + Psyr_4715 0.84 -0.4
5,588,794 - Psyr_4715 0.84 -1.5
5,589,111 + +0.5
5,589,112 - +0.5
5,589,174 - +0.8
5,589,280 - -0.4
5,589,664 - Psyr_4716 0.52 +2.0
5,589,756 + Psyr_4716 0.67 +0.1
5,589,776 + Psyr_4716 0.70 +0.5
5,589,776 + Psyr_4716 0.70 +1.0
5,589,776 + Psyr_4716 0.70 +0.6
5,589,776 + Psyr_4716 0.70 +0.2
5,589,776 + Psyr_4716 0.70 +0.2
5,589,776 + Psyr_4716 0.70 +0.9
5,589,777 - Psyr_4716 0.70 +0.4
5,589,985 - +0.1
5,590,015 + +1.0
5,590,016 - +0.3
5,590,016 - -1.4
5,590,016 - -0.5
5,590,016 - +2.6
5,590,016 - -0.2
5,590,083 - +1.0
5,590,158 - -1.1
5,590,225 - +0.1
5,590,241 + +0.4
5,590,242 - +0.0

Or see this region's nucleotide sequence