Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4567 and Psyr_4568 are separated by 62 nucleotides Psyr_4568 and Psyr_4569 are separated by 264 nucleotides
Psyr_4567: Psyr_4567 - Protein of unknown function UPF0075, at 5,431,616 to 5,432,710
_4567
Psyr_4568: Psyr_4568 - HesB/YadR/YfhF, at 5,432,773 to 5,433,123
_4568
Psyr_4569: Psyr_4569 - N-acetyl-gamma-glutamyl-phosphate reductase, at 5,433,388 to 5,434,422
_4569
Position (kb) 5432
5433
5434 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5431.909 kb on + strand, within Psyr_4567 at 5431.910 kb on - strand, within Psyr_4567 at 5431.984 kb on + strand, within Psyr_4567 at 5431.985 kb on - strand, within Psyr_4567 at 5432.181 kb on + strand, within Psyr_4567 at 5432.182 kb on - strand, within Psyr_4567 at 5432.323 kb on + strand, within Psyr_4567 at 5432.323 kb on + strand, within Psyr_4567 at 5432.323 kb on + strand, within Psyr_4567 at 5432.324 kb on - strand, within Psyr_4567 at 5432.324 kb on - strand, within Psyr_4567 at 5433.160 kb on - strand at 5433.201 kb on - strand at 5433.274 kb on + strand at 5433.282 kb on - strand at 5433.288 kb on + strand at 5433.288 kb on + strand at 5433.288 kb on + strand at 5433.288 kb on + strand at 5433.288 kb on + strand at 5433.289 kb on - strand at 5433.289 kb on - strand at 5433.289 kb on - strand at 5433.289 kb on - strand at 5433.289 kb on - strand at 5433.289 kb on - strand at 5433.289 kb on - strand at 5433.295 kb on + strand at 5433.295 kb on + strand at 5433.295 kb on + strand at 5433.295 kb on + strand at 5433.296 kb on - strand at 5433.296 kb on - strand at 5433.296 kb on - strand at 5433.296 kb on - strand at 5433.302 kb on + strand at 5433.302 kb on + strand at 5433.302 kb on + strand at 5433.302 kb on + strand at 5433.309 kb on + strand at 5433.309 kb on + strand at 5433.309 kb on + strand at 5433.309 kb on + strand at 5433.309 kb on + strand at 5433.309 kb on + strand at 5433.309 kb on + strand at 5433.309 kb on + strand at 5433.310 kb on - strand at 5433.316 kb on + strand at 5433.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 5,431,909 + Psyr_4567 0.27 -1.0 5,431,910 - Psyr_4567 0.27 -0.7 5,431,984 + Psyr_4567 0.34 -0.8 5,431,985 - Psyr_4567 0.34 -0.6 5,432,181 + Psyr_4567 0.52 -0.8 5,432,182 - Psyr_4567 0.52 -0.7 5,432,323 + Psyr_4567 0.65 -2.6 5,432,323 + Psyr_4567 0.65 +0.5 5,432,323 + Psyr_4567 0.65 +1.4 5,432,324 - Psyr_4567 0.65 -1.7 5,432,324 - Psyr_4567 0.65 -0.2 5,433,160 - +1.8 5,433,201 - -0.7 5,433,274 + +2.3 5,433,282 - +1.3 5,433,288 + +0.8 5,433,288 + +1.3 5,433,288 + +1.6 5,433,288 + +0.6 5,433,288 + +2.0 5,433,289 - +1.2 5,433,289 - +0.1 5,433,289 - -0.2 5,433,289 - +0.9 5,433,289 - +0.9 5,433,289 - +0.2 5,433,289 - -0.1 5,433,295 + +0.3 5,433,295 + -0.3 5,433,295 + +1.5 5,433,295 + -0.6 5,433,296 - -1.4 5,433,296 - +0.5 5,433,296 - -2.5 5,433,296 - +1.0 5,433,302 + +0.8 5,433,302 + +0.4 5,433,302 + +0.1 5,433,302 + -0.3 5,433,309 + +0.2 5,433,309 + -0.6 5,433,309 + +0.3 5,433,309 + +0.4 5,433,309 + +1.0 5,433,309 + +0.7 5,433,309 + +1.2 5,433,309 + -1.0 5,433,310 - +1.1 5,433,316 + +0.4 5,433,316 + +0.6
Or see this region's nucleotide sequence