Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3243

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3242 and Psyr_3243 are separated by 38 nucleotidesPsyr_3243 and Psyr_3244 are separated by 292 nucleotides Psyr_3242: Psyr_3242 - Glycerophosphodiester phosphodiesterase, at 3,881,044 to 3,882,186 _3242 Psyr_3243: Psyr_3243 - TonB-dependent siderophore receptor, at 3,882,225 to 3,884,411 _3243 Psyr_3244: Psyr_3244 - Phospholipase D/Transphosphatidylase, at 3,884,704 to 3,886,047 _3244 Position (kb) 3882 3883 3884 3885Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3881.246 kb on - strand, within Psyr_3242at 3881.318 kb on + strand, within Psyr_3242at 3881.318 kb on + strand, within Psyr_3242at 3881.479 kb on + strand, within Psyr_3242at 3881.554 kb on + strand, within Psyr_3242at 3881.555 kb on - strand, within Psyr_3242at 3881.555 kb on - strand, within Psyr_3242at 3881.555 kb on - strand, within Psyr_3242at 3881.793 kb on - strand, within Psyr_3242at 3881.848 kb on + strand, within Psyr_3242at 3881.848 kb on + strand, within Psyr_3242at 3881.848 kb on + strand, within Psyr_3242at 3881.849 kb on - strand, within Psyr_3242at 3881.849 kb on - strand, within Psyr_3242at 3881.849 kb on - strand, within Psyr_3242at 3881.852 kb on - strand, within Psyr_3242at 3881.852 kb on - strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.971 kb on + strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.972 kb on - strand, within Psyr_3242at 3881.973 kb on + strand, within Psyr_3242at 3881.974 kb on - strand, within Psyr_3242at 3882.037 kb on + strand, within Psyr_3242at 3882.037 kb on + strand, within Psyr_3242at 3882.038 kb on - strand, within Psyr_3242at 3882.038 kb on - strand, within Psyr_3242at 3882.039 kb on + strand, within Psyr_3242at 3882.304 kb on + strandat 3882.304 kb on + strandat 3882.436 kb on + strandat 3882.436 kb on + strandat 3882.436 kb on + strandat 3882.436 kb on + strandat 3882.436 kb on + strandat 3882.898 kb on + strand, within Psyr_3243at 3882.898 kb on + strand, within Psyr_3243at 3882.910 kb on + strand, within Psyr_3243at 3882.910 kb on + strand, within Psyr_3243at 3882.910 kb on + strand, within Psyr_3243at 3882.927 kb on + strand, within Psyr_3243at 3882.964 kb on + strand, within Psyr_3243at 3882.965 kb on - strand, within Psyr_3243at 3883.094 kb on + strand, within Psyr_3243at 3883.094 kb on + strand, within Psyr_3243at 3883.358 kb on + strand, within Psyr_3243at 3883.393 kb on + strand, within Psyr_3243at 3883.394 kb on - strand, within Psyr_3243at 3883.395 kb on + strand, within Psyr_3243at 3883.395 kb on + strand, within Psyr_3243at 3883.395 kb on + strand, within Psyr_3243at 3883.395 kb on + strand, within Psyr_3243at 3883.396 kb on - strand, within Psyr_3243at 3883.396 kb on - strand, within Psyr_3243at 3883.396 kb on - strand, within Psyr_3243at 3883.396 kb on - strand, within Psyr_3243at 3883.396 kb on - strand, within Psyr_3243at 3883.435 kb on + strand, within Psyr_3243at 3883.435 kb on + strand, within Psyr_3243at 3883.435 kb on + strand, within Psyr_3243at 3883.435 kb on + strand, within Psyr_3243at 3883.436 kb on - strand, within Psyr_3243at 3883.436 kb on - strand, within Psyr_3243at 3883.436 kb on - strand, within Psyr_3243at 3883.523 kb on - strand, within Psyr_3243at 3883.523 kb on - strand, within Psyr_3243at 3884.103 kb on + strand, within Psyr_3243at 3884.103 kb on + strand, within Psyr_3243at 3884.103 kb on + strand, within Psyr_3243at 3884.104 kb on - strand, within Psyr_3243at 3884.152 kb on + strand, within Psyr_3243at 3884.153 kb on - strand, within Psyr_3243at 3884.415 kb on + strandat 3884.415 kb on + strandat 3884.416 kb on - strandat 3884.416 kb on - strandat 3884.416 kb on - strandat 3884.667 kb on - strandat 3884.703 kb on + strandat 3884.703 kb on + strandat 3884.704 kb on - strandat 3884.704 kb on - strandat 3884.704 kb on - strandat 3884.845 kb on + strand, within Psyr_3244at 3884.845 kb on + strand, within Psyr_3244at 3884.846 kb on - strand, within Psyr_3244at 3884.846 kb on - strand, within Psyr_3244at 3884.846 kb on - strand, within Psyr_3244at 3884.846 kb on - strand, within Psyr_3244at 3884.846 kb on - strand, within Psyr_3244at 3884.860 kb on + strand, within Psyr_3244at 3884.861 kb on - strand, within Psyr_3244at 3884.906 kb on - strand, within Psyr_3244at 3885.038 kb on - strand, within Psyr_3244at 3885.038 kb on - strand, within Psyr_3244at 3885.058 kb on + strand, within Psyr_3244at 3885.137 kb on - strand, within Psyr_3244at 3885.180 kb on + strand, within Psyr_3244at 3885.181 kb on - strand, within Psyr_3244at 3885.184 kb on + strand, within Psyr_3244at 3885.185 kb on - strand, within Psyr_3244at 3885.260 kb on + strand, within Psyr_3244at 3885.260 kb on + strand, within Psyr_3244at 3885.260 kb on + strand, within Psyr_3244at 3885.260 kb on + strand, within Psyr_3244

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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3,881,246 - Psyr_3242 0.18 -0.1
3,881,318 + Psyr_3242 0.24 +0.4
3,881,318 + Psyr_3242 0.24 +1.2
3,881,479 + Psyr_3242 0.38 -0.6
3,881,554 + Psyr_3242 0.45 -0.4
3,881,555 - Psyr_3242 0.45 -0.1
3,881,555 - Psyr_3242 0.45 +2.2
3,881,555 - Psyr_3242 0.45 -0.3
3,881,793 - Psyr_3242 0.66 +1.2
3,881,848 + Psyr_3242 0.70 -0.1
3,881,848 + Psyr_3242 0.70 +1.3
3,881,848 + Psyr_3242 0.70 -0.3
3,881,849 - Psyr_3242 0.70 +0.2
3,881,849 - Psyr_3242 0.70 -2.6
3,881,849 - Psyr_3242 0.70 +0.4
3,881,852 - Psyr_3242 0.71 +0.4
3,881,852 - Psyr_3242 0.71 -0.7
3,881,971 + Psyr_3242 0.81 +0.6
3,881,971 + Psyr_3242 0.81 -1.6
3,881,971 + Psyr_3242 0.81 -0.6
3,881,971 + Psyr_3242 0.81 +0.4
3,881,971 + Psyr_3242 0.81 -0.6
3,881,971 + Psyr_3242 0.81 +0.9
3,881,971 + Psyr_3242 0.81 +0.3
3,881,971 + Psyr_3242 0.81 -0.3
3,881,971 + Psyr_3242 0.81 +0.8
3,881,971 + Psyr_3242 0.81 +0.9
3,881,971 + Psyr_3242 0.81 -2.9
3,881,971 + Psyr_3242 0.81 +0.2
3,881,972 - Psyr_3242 0.81 -0.3
3,881,972 - Psyr_3242 0.81 +2.2
3,881,972 - Psyr_3242 0.81 -2.9
3,881,972 - Psyr_3242 0.81 +0.3
3,881,972 - Psyr_3242 0.81 +1.9
3,881,972 - Psyr_3242 0.81 +1.5
3,881,972 - Psyr_3242 0.81 +0.1
3,881,972 - Psyr_3242 0.81 -2.4
3,881,972 - Psyr_3242 0.81 +0.4
3,881,972 - Psyr_3242 0.81 +0.3
3,881,972 - Psyr_3242 0.81 +0.5
3,881,972 - Psyr_3242 0.81 +0.4
3,881,972 - Psyr_3242 0.81 -0.3
3,881,973 + Psyr_3242 0.81 +1.3
3,881,974 - Psyr_3242 0.81 -0.3
3,882,037 + Psyr_3242 0.87 +0.5
3,882,037 + Psyr_3242 0.87 -1.9
3,882,038 - Psyr_3242 0.87 +1.1
3,882,038 - Psyr_3242 0.87 +1.9
3,882,039 + Psyr_3242 0.87 -0.6
3,882,304 + +0.3
3,882,304 + -1.3
3,882,436 + -1.8
3,882,436 + +2.4
3,882,436 + +0.1
3,882,436 + +0.5
3,882,436 + +0.4
3,882,898 + Psyr_3243 0.31 +0.1
3,882,898 + Psyr_3243 0.31 -2.2
3,882,910 + Psyr_3243 0.31 -0.0
3,882,910 + Psyr_3243 0.31 +1.2
3,882,910 + Psyr_3243 0.31 -0.2
3,882,927 + Psyr_3243 0.32 +0.1
3,882,964 + Psyr_3243 0.34 +0.9
3,882,965 - Psyr_3243 0.34 +0.4
3,883,094 + Psyr_3243 0.40 +2.0
3,883,094 + Psyr_3243 0.40 +0.6
3,883,358 + Psyr_3243 0.52 -0.1
3,883,393 + Psyr_3243 0.53 +0.8
3,883,394 - Psyr_3243 0.53 +0.7
3,883,395 + Psyr_3243 0.53 -1.0
3,883,395 + Psyr_3243 0.53 +0.5
3,883,395 + Psyr_3243 0.53 +0.6
3,883,395 + Psyr_3243 0.53 -0.7
3,883,396 - Psyr_3243 0.54 +2.2
3,883,396 - Psyr_3243 0.54 +0.3
3,883,396 - Psyr_3243 0.54 +0.4
3,883,396 - Psyr_3243 0.54 +0.3
3,883,396 - Psyr_3243 0.54 +0.4
3,883,435 + Psyr_3243 0.55 +0.4
3,883,435 + Psyr_3243 0.55 -0.1
3,883,435 + Psyr_3243 0.55 -0.3
3,883,435 + Psyr_3243 0.55 +0.8
3,883,436 - Psyr_3243 0.55 -2.2
3,883,436 - Psyr_3243 0.55 -1.0
3,883,436 - Psyr_3243 0.55 -0.2
3,883,523 - Psyr_3243 0.59 +0.4
3,883,523 - Psyr_3243 0.59 -0.8
3,884,103 + Psyr_3243 0.86 +1.2
3,884,103 + Psyr_3243 0.86 -0.6
3,884,103 + Psyr_3243 0.86 -0.5
3,884,104 - Psyr_3243 0.86 +1.1
3,884,152 + Psyr_3243 0.88 +0.7
3,884,153 - Psyr_3243 0.88 +0.2
3,884,415 + -0.1
3,884,415 + +1.9
3,884,416 - +0.6
3,884,416 - +1.3
3,884,416 - -0.9
3,884,667 - +0.9
3,884,703 + +0.8
3,884,703 + +0.2
3,884,704 - +0.0
3,884,704 - +2.6
3,884,704 - -0.4
3,884,845 + Psyr_3244 0.10 -0.2
3,884,845 + Psyr_3244 0.10 +0.1
3,884,846 - Psyr_3244 0.11 -0.6
3,884,846 - Psyr_3244 0.11 +1.1
3,884,846 - Psyr_3244 0.11 -0.8
3,884,846 - Psyr_3244 0.11 +0.6
3,884,846 - Psyr_3244 0.11 -1.5
3,884,860 + Psyr_3244 0.12 -1.3
3,884,861 - Psyr_3244 0.12 -0.4
3,884,906 - Psyr_3244 0.15 +0.9
3,885,038 - Psyr_3244 0.25 -0.3
3,885,038 - Psyr_3244 0.25 +0.9
3,885,058 + Psyr_3244 0.26 +1.7
3,885,137 - Psyr_3244 0.32 +0.3
3,885,180 + Psyr_3244 0.35 +1.6
3,885,181 - Psyr_3244 0.35 +0.6
3,885,184 + Psyr_3244 0.36 -0.9
3,885,185 - Psyr_3244 0.36 -0.4
3,885,260 + Psyr_3244 0.41 +0.1
3,885,260 + Psyr_3244 0.41 -0.7
3,885,260 + Psyr_3244 0.41 +1.8
3,885,260 + Psyr_3244 0.41 +0.1

Or see this region's nucleotide sequence