Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3237

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3236 and Psyr_3237 are separated by 129 nucleotidesPsyr_3237 and Psyr_3238 are separated by 42 nucleotidesPsyr_3238 and Psyr_3239 are separated by 234 nucleotides Psyr_3236: Psyr_3236 - transcriptional regulator, LysR family, at 3,874,607 to 3,875,497 _3236 Psyr_3237: Psyr_3237 - 3-oxoacid CoA-transferase, at 3,875,627 to 3,876,328 _3237 Psyr_3238: Psyr_3238 - 3-oxoacid CoA-transferase, at 3,876,371 to 3,877,027 _3238 Psyr_3239: Psyr_3239 - Short chain fatty acid transporter, at 3,877,262 to 3,878,680 _3239 Position (kb) 3875 3876 3877Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.240 kb on - strand, within Psyr_3236at 3875.609 kb on + strandat 3875.609 kb on + strandat 3875.610 kb on - strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.657 kb on + strandat 3875.698 kb on - strand, within Psyr_3237at 3875.987 kb on + strand, within Psyr_3237at 3875.987 kb on + strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.260 kb on + strandat 3876.260 kb on + strandat 3876.261 kb on - strandat 3876.276 kb on + strandat 3876.277 kb on - strandat 3876.277 kb on - strandat 3876.354 kb on + strandat 3876.354 kb on + strandat 3876.355 kb on - strandat 3876.428 kb on + strandat 3876.431 kb on + strandat 3876.431 kb on + strandat 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.477 kb on + strand, within Psyr_3238at 3876.478 kb on - strand, within Psyr_3238at 3876.478 kb on - strand, within Psyr_3238at 3876.672 kb on + strand, within Psyr_3238at 3877.208 kb on + strandat 3877.209 kb on - strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.243 kb on - strandat 3877.275 kb on + strandat 3877.275 kb on + strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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3,875,016 + Psyr_3236 0.46 +0.8
3,875,016 + Psyr_3236 0.46 +0.8
3,875,016 + Psyr_3236 0.46 +0.4
3,875,017 - Psyr_3236 0.46 -0.8
3,875,017 - Psyr_3236 0.46 +0.6
3,875,017 - Psyr_3236 0.46 +2.1
3,875,017 - Psyr_3236 0.46 +0.6
3,875,017 - Psyr_3236 0.46 -1.0
3,875,017 - Psyr_3236 0.46 -0.6
3,875,017 - Psyr_3236 0.46 +0.6
3,875,240 - Psyr_3236 0.71 +0.1
3,875,609 + -0.5
3,875,609 + +0.7
3,875,610 - +0.4
3,875,611 + +0.4
3,875,611 + +0.5
3,875,611 + -0.4
3,875,611 + -0.5
3,875,611 + -2.5
3,875,612 - +0.4
3,875,612 - +1.6
3,875,612 - +0.7
3,875,657 + +1.4
3,875,698 - Psyr_3237 0.10 +0.6
3,875,987 + Psyr_3237 0.51 +0.2
3,875,987 + Psyr_3237 0.51 +0.9
3,875,988 - Psyr_3237 0.51 +1.2
3,875,988 - Psyr_3237 0.51 +1.5
3,876,135 - Psyr_3237 0.72 -0.6
3,876,135 - Psyr_3237 0.72 -2.2
3,876,260 + +0.1
3,876,260 + +0.4
3,876,261 - +1.1
3,876,276 + +0.2
3,876,277 - +0.0
3,876,277 - +0.6
3,876,354 + +0.3
3,876,354 + -1.0
3,876,355 - -0.1
3,876,428 + -0.3
3,876,431 + +2.9
3,876,431 + +0.2
3,876,473 + Psyr_3238 0.16 +0.2
3,876,473 + Psyr_3238 0.16 -0.5
3,876,473 + Psyr_3238 0.16 -0.8
3,876,473 + Psyr_3238 0.16 +0.4
3,876,473 + Psyr_3238 0.16 +1.0
3,876,473 + Psyr_3238 0.16 -0.2
3,876,473 + Psyr_3238 0.16 +0.7
3,876,473 + Psyr_3238 0.16 -0.3
3,876,473 + Psyr_3238 0.16 -0.2
3,876,473 + Psyr_3238 0.16 +2.1
3,876,473 + Psyr_3238 0.16 +0.7
3,876,473 + Psyr_3238 0.16 +0.7
3,876,473 + Psyr_3238 0.16 +0.2
3,876,473 + Psyr_3238 0.16 -0.7
3,876,473 + Psyr_3238 0.16 +0.2
3,876,473 + Psyr_3238 0.16 +0.6
3,876,473 + Psyr_3238 0.16 +0.1
3,876,474 - Psyr_3238 0.16 -0.5
3,876,474 - Psyr_3238 0.16 +1.4
3,876,474 - Psyr_3238 0.16 +0.4
3,876,474 - Psyr_3238 0.16 -0.9
3,876,474 - Psyr_3238 0.16 +0.8
3,876,474 - Psyr_3238 0.16 -0.6
3,876,474 - Psyr_3238 0.16 -1.3
3,876,474 - Psyr_3238 0.16 +0.2
3,876,474 - Psyr_3238 0.16 -0.1
3,876,474 - Psyr_3238 0.16 +0.3
3,876,474 - Psyr_3238 0.16 +1.1
3,876,474 - Psyr_3238 0.16 +0.2
3,876,474 - Psyr_3238 0.16 +0.1
3,876,474 - Psyr_3238 0.16 +0.1
3,876,474 - Psyr_3238 0.16 +1.4
3,876,474 - Psyr_3238 0.16 +0.4
3,876,477 + Psyr_3238 0.16 +0.7
3,876,478 - Psyr_3238 0.16 -0.6
3,876,478 - Psyr_3238 0.16 +1.0
3,876,672 + Psyr_3238 0.46 +0.2
3,877,208 + +0.9
3,877,209 - +0.7
3,877,238 + +0.5
3,877,238 + +0.7
3,877,238 + +1.2
3,877,238 + +0.2
3,877,238 + -1.0
3,877,243 - +0.7
3,877,275 + -0.4
3,877,275 + -0.7
3,877,276 - -0.3
3,877,276 - +0.3
3,877,276 - -0.4
3,877,276 - +0.2

Or see this region's nucleotide sequence