Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2664

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
3,233,468	+		Psyr_2662	0.89	-1.0
3,233,468	+		Psyr_2662	0.89	+0.3
3,233,468	+		Psyr_2662	0.89	+0.8
3,233,520	+				-0.7
3,233,520	+				-0.8
3,233,520	+				+0.6
3,233,520	+				-0.0
3,233,520	+				+0.9
3,233,520	+				-0.1
3,233,520	+				-0.7
3,233,520	+				+0.9
3,233,520	+				+0.3
3,233,521	-				-0.3
3,233,521	-				+0.6
3,233,521	-				+0.2
3,233,521	-				+2.1
3,233,521	-				-0.5
3,233,522	+				+0.6
3,233,522	+				+0.1
3,233,522	+				-1.5
3,233,522	+				+0.6
3,233,522	+				+0.2
3,233,522	+				+0.2
3,233,523	-				+0.2
3,233,523	-				+0.8
3,233,523	-				+0.3
3,233,640	+				-0.1
3,233,641	-				+1.1
3,233,641	-				-1.4
3,233,703	+				+0.4
3,233,713	+				-0.2
3,233,713	+				+0.5
3,233,713	+				+0.3
3,233,714	-				-1.0
3,233,716	+				-1.8
3,233,716	+				-2.1
3,233,716	+				+1.1
3,233,716	+				+0.0
3,233,716	+				+0.1
3,233,717	-				+0.4
3,233,717	-				-0.3
3,233,717	-				+0.9
3,233,722	+				+0.0
3,233,722	+				-0.5
3,233,723	-				-1.4
3,233,723	-				-0.3
3,233,762	+				-1.4
3,233,762	+				-1.2
3,233,797	+				-0.1
3,233,831	-				-1.0
3,233,837	+				-1.6
3,233,838	-				+0.4
3,233,838	-				+0.4
3,233,843	+				-0.4
3,233,843	+				-1.3
3,233,843	+				-0.9
3,233,844	-				-0.4
3,233,847	+				-0.5
3,233,847	+				+0.1
3,233,848	-				-0.5
3,233,848	-				-0.6
3,233,848	-				-1.4
3,233,848	-				-0.8
3,233,899	+				+0.7
3,233,944	+				-0.9
3,233,944	+				-0.3
3,233,944	+				-0.2
3,233,944	+				+0.3
3,233,945	-				-0.8
3,233,945	-				+0.6
3,233,945	-				+0.6
3,233,945	-				-0.6
3,233,945	-				-0.2
3,233,963	-		Psyr_2663	0.14	-0.9
3,233,963	-		Psyr_2663	0.14	+0.8
3,234,140	+		Psyr_2663	0.63	-0.3
3,234,140	+		Psyr_2663	0.63	+0.2
3,234,140	+		Psyr_2663	0.63	+0.8
3,234,140	+		Psyr_2663	0.63	-0.9
3,234,141	-		Psyr_2663	0.64	+1.7
3,234,141	-		Psyr_2663	0.64	-1.2
3,234,141	-		Psyr_2663	0.64	-0.7
3,234,141	-		Psyr_2663	0.64	-0.0
3,234,141	-		Psyr_2663	0.64	+1.6
3,234,225	+		Psyr_2663	0.87	+0.6
3,234,225	+		Psyr_2663	0.87	+0.1
3,234,226	-		Psyr_2663	0.87	+0.1
3,234,226	-		Psyr_2663	0.87	-1.4
3,234,226	-		Psyr_2663	0.87	+1.6
3,234,226	-		Psyr_2663	0.87	+0.7
3,234,226	-		Psyr_2663	0.87	+0.2
3,234,226	-		Psyr_2663	0.87	-0.4
3,234,229	+		Psyr_2663	0.88	+0.3
3,234,229	+		Psyr_2663	0.88	+1.0
3,234,230	-		Psyr_2663	0.88	-1.0
3,234,230	-		Psyr_2663	0.88	+0.1
3,234,230	-		Psyr_2663	0.88	-1.6
3,234,273	+				-0.3
3,234,273	+				+1.2
3,234,285	+				+0.4
3,234,286	-				-1.4
3,234,286	-				-0.1
3,234,328	-				-1.8
3,234,328	-				-0.4
3,234,328	-				-0.8
3,234,328	-				-0.7
3,234,384	+				+0.1
3,234,418	-				-1.2
3,234,418	-				-0.2
3,234,564	+		Psyr_2664	0.21	+1.0
3,234,564	+		Psyr_2664	0.21	+0.3
3,234,564	+		Psyr_2664	0.21	-1.1
3,234,565	-		Psyr_2664	0.21	-1.1
3,234,565	-		Psyr_2664	0.21	-1.4
3,234,565	-		Psyr_2664	0.21	+0.8
3,234,565	-		Psyr_2664	0.21	+0.7
3,234,672	+		Psyr_2664	0.36	-0.5
3,234,691	+		Psyr_2664	0.38	-1.1
3,234,691	+		Psyr_2664	0.38	+0.1
3,234,691	+		Psyr_2664	0.38	-0.4
3,234,712	+		Psyr_2664	0.41	-0.0
3,234,872	+		Psyr_2664	0.63	+0.9
3,234,872	+		Psyr_2664	0.63	-0.5
3,234,872	+		Psyr_2664	0.63	-1.2
3,234,872	+		Psyr_2664	0.63	-2.0
3,234,872	+		Psyr_2664	0.63	-1.7
3,234,872	+		Psyr_2664	0.63	-1.6
3,234,872	+		Psyr_2664	0.63	-0.2
3,234,872	+		Psyr_2664	0.63	-0.7
3,234,872	+		Psyr_2664	0.63	-0.5
3,234,872	+		Psyr_2664	0.63	-0.9
3,234,873	-		Psyr_2664	0.63	-0.8
3,234,873	-		Psyr_2664	0.63	-1.0
3,234,873	-		Psyr_2664	0.63	-0.1
3,234,873	-		Psyr_2664	0.63	-0.7
3,234,873	-		Psyr_2664	0.63	-0.1
3,234,873	-		Psyr_2664	0.63	-0.0
3,234,873	-		Psyr_2664	0.63	-1.0
3,234,905	-		Psyr_2664	0.68	+0.3
3,235,077	-				-1.7
3,235,077	-				+1.1
3,235,097	+				-0.4
3,235,099	+				-1.5
3,235,099	+				+0.7
3,235,099	+				-1.5
3,235,099	+				-1.8
3,235,100	-				+0.2
3,235,100	-				+0.1
3,235,100	-				+0.2
3,235,100	-				+0.0
3,235,100	-				-0.3
3,235,100	-				-0.1
3,235,100	-				-0.2
3,235,100	-				-2.2
3,235,103	+				-1.9
3,235,103	+				-1.1
3,235,103	+				-0.4
3,235,103	+				-0.4
3,235,104	-				+0.4
3,235,104	-				+0.6
3,235,104	-				-0.3
3,235,104	-				-0.0
3,235,181	+				-0.7
3,235,181	+				-2.2
3,235,195	-				-0.4
3,235,270	-				+0.1
3,235,274	-				+0.1
3,235,274	-				-1.1
3,235,295	+				+0.0
3,235,296	-				-0.0
3,235,296	-				-0.2
3,235,368	+				+0.9
3,235,368	+				-0.2
3,235,369	-				-1.6
3,235,369	-				-0.1
3,235,544	+				+1.9
3,235,544	+				-2.1
3,235,544	+				+0.8
3,235,544	+				+0.6
3,235,544	+				-1.0
3,235,545	-				+2.4
3,235,545	-				+2.9
3,235,545	-				-2.2
3,235,545	-				-0.7
3,235,549	-				-0.9
3,235,568	-				+0.2
3,235,578	-				-0.9
3,235,578	-				-1.6
3,235,589	-				-0.3
3,235,597	+		Psyr_2665	0.11	+0.1
3,235,598	-		Psyr_2665	0.11	+1.1
3,235,598	-		Psyr_2665	0.11	-0.2
3,235,623	+		Psyr_2665	0.16	+2.6
3,235,623	+		Psyr_2665	0.16	+0.7
3,235,623	+		Psyr_2665	0.16	-2.4
3,235,623	+		Psyr_2665	0.16	-0.1
3,235,624	-		Psyr_2665	0.16	-0.9
3,235,624	-		Psyr_2665	0.16	+1.5
3,235,666	-		Psyr_2665	0.25	-0.3
3,235,736	-		Psyr_2665	0.38	+0.3
3,235,753	+		Psyr_2665	0.42	-0.1
3,235,771	-		Psyr_2665	0.45	-1.5
3,235,771	-		Psyr_2665	0.45	+1.0
3,235,797	+		Psyr_2665	0.50	+0.1
3,235,823	-		Psyr_2665	0.56	+0.8
3,235,899	+		Psyr_2665	0.71	-1.6
3,235,900	-		Psyr_2665	0.71	+0.3
3,235,900	-		Psyr_2665	0.71	-0.2
3,235,926	-		Psyr_2665	0.76	-0.1
3,235,926	-		Psyr_2665	0.76	-0.0
3,235,927	+		Psyr_2665	0.76	-0.0
3,235,928	-		Psyr_2665	0.76	-1.0
3,236,014	-				+0.8