Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2408

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,788,590	+		Psyr_2407	0.44	-0.6
2,788,590	+		Psyr_2407	0.44	+0.3
2,788,590	+		Psyr_2407	0.44	+0.2
2,788,590	+		Psyr_2407	0.44	-2.1
2,788,590	+		Psyr_2407	0.44	-0.3
2,788,590	+		Psyr_2407	0.44	+0.9
2,788,590	+		Psyr_2407	0.44	-0.6
2,788,591	-		Psyr_2407	0.44	-0.1
2,788,591	-		Psyr_2407	0.44	-0.1
2,788,591	-		Psyr_2407	0.44	-1.7
2,788,748	+		Psyr_2407	0.54	-1.1
2,788,954	-		Psyr_2407	0.68	-1.2
2,789,538	+		Psyr_2408	0.14	+1.3
2,789,538	+		Psyr_2408	0.14	+0.8
2,789,539	-		Psyr_2408	0.14	+1.2
2,789,539	-		Psyr_2408	0.14	+1.0
2,789,539	-		Psyr_2408	0.14	-0.4
2,789,684	+		Psyr_2408	0.31	+1.5
2,789,685	-		Psyr_2408	0.31	+1.0
2,789,688	+		Psyr_2408	0.31	+1.2
2,789,711	+		Psyr_2408	0.34	+0.0
2,789,711	+		Psyr_2408	0.34	+0.2
2,789,711	+		Psyr_2408	0.34	+1.8
2,789,712	-		Psyr_2408	0.34	+0.3
2,789,712	-		Psyr_2408	0.34	+0.5
2,789,723	+		Psyr_2408	0.35	+0.7
2,789,724	-		Psyr_2408	0.36	+0.5
2,789,793	-		Psyr_2408	0.44	+0.1
2,789,924	-		Psyr_2408	0.59	-0.4
2,790,227	+				-0.5
2,790,228	-				-1.6
2,790,228	-				+0.7
2,790,293	-				+0.8
2,790,345	+				-0.1
2,790,345	+				+0.1
2,790,345	+				+1.2
2,790,346	-				+0.7
2,790,398	+		Psyr_2409	0.16	+1.1
2,790,399	-		Psyr_2409	0.16	-0.7
2,790,399	-		Psyr_2409	0.16	+1.2
2,790,399	-		Psyr_2409	0.16	-0.6
2,790,399	-		Psyr_2409	0.16	+0.8
2,790,453	+		Psyr_2409	0.25	-1.7
2,790,454	-		Psyr_2409	0.25	-0.9
2,790,454	-		Psyr_2409	0.25	+0.6
2,790,454	-		Psyr_2409	0.25	+0.3
2,790,654	+		Psyr_2409	0.59	+0.5
2,790,864	+				-0.1
2,790,864	+				-0.5
2,790,864	+				+0.4
2,790,865	-				+0.5
2,790,865	-				-0.8
2,791,006	+				-1.2
2,791,034	+				-1.3
2,791,069	-				-1.1
2,791,069	-				+0.4
2,791,111	+				+0.7
2,791,111	+				+0.5
2,791,112	-				-0.4
2,791,181	+				-0.9
2,791,182	-				+1.0