Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1571 and Psyr_1572 are separated by 86 nucleotides Psyr_1572 and Psyr_1573 are separated by 66 nucleotides Psyr_1573 and Psyr_1574 are separated by 76 nucleotides
Psyr_1571: Psyr_1571 - Twin-arginine translocation pathway signal:Copper-resistance protein CopA, at 1,765,724 to 1,767,502
_1571
Psyr_1572: Psyr_1572 - HNH endonuclease, at 1,767,589 to 1,767,963
_1572
Psyr_1573: Psyr_1573 - cyclic nucleotide-binding protein, at 1,768,030 to 1,768,506
_1573
Psyr_1574: Psyr_1574 - oligopeptidase B, Serine peptidase, MEROPS family S09A, at 1,768,583 to 1,770,643
_1574
Position (kb) 1767
1768 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1766.647 kb on + strand, within Psyr_1571 at 1766.661 kb on + strand, within Psyr_1571 at 1766.760 kb on + strand, within Psyr_1571 at 1766.760 kb on + strand, within Psyr_1571 at 1766.760 kb on + strand, within Psyr_1571 at 1766.766 kb on + strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.907 kb on + strand, within Psyr_1571 at 1766.907 kb on + strand, within Psyr_1571 at 1766.907 kb on + strand, within Psyr_1571 at 1766.908 kb on - strand, within Psyr_1571 at 1766.908 kb on - strand, within Psyr_1571 at 1766.908 kb on - strand, within Psyr_1571 at 1766.910 kb on + strand, within Psyr_1571 at 1766.910 kb on + strand, within Psyr_1571 at 1767.081 kb on + strand, within Psyr_1571 at 1767.087 kb on + strand, within Psyr_1571 at 1767.087 kb on + strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.683 kb on + strand, within Psyr_1572 at 1767.683 kb on + strand, within Psyr_1572 at 1767.683 kb on + strand, within Psyr_1572 at 1767.684 kb on - strand, within Psyr_1572 at 1767.684 kb on - strand, within Psyr_1572 at 1767.725 kb on + strand, within Psyr_1572 at 1767.725 kb on + strand, within Psyr_1572 at 1767.726 kb on - strand, within Psyr_1572 at 1767.793 kb on + strand, within Psyr_1572 at 1767.794 kb on - strand, within Psyr_1572 at 1767.858 kb on - strand, within Psyr_1572 at 1767.858 kb on - strand, within Psyr_1572 at 1767.858 kb on - strand, within Psyr_1572 at 1767.937 kb on - strand at 1768.048 kb on + strand at 1768.048 kb on + strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.194 kb on + strand, within Psyr_1573 at 1768.194 kb on + strand, within Psyr_1573 at 1768.195 kb on - strand, within Psyr_1573 at 1768.195 kb on - strand, within Psyr_1573 at 1768.389 kb on + strand, within Psyr_1573 at 1768.401 kb on - strand, within Psyr_1573 at 1768.414 kb on - strand, within Psyr_1573 at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.510 kb on - strand at 1768.556 kb on + strand at 1768.559 kb on + strand at 1768.559 kb on + strand at 1768.559 kb on + strand at 1768.559 kb on + strand at 1768.560 kb on - strand at 1768.560 kb on - strand at 1768.602 kb on - strand at 1768.602 kb on - strand at 1768.612 kb on + strand at 1768.612 kb on + strand at 1768.612 kb on + strand at 1768.612 kb on + strand at 1768.735 kb on + strand at 1768.782 kb on + strand at 1768.860 kb on + strand, within Psyr_1574 at 1768.861 kb on - strand, within Psyr_1574 at 1768.861 kb on - strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 1,766,647 + Psyr_1571 0.52 -1.0 1,766,661 + Psyr_1571 0.53 +0.1 1,766,760 + Psyr_1571 0.58 -0.2 1,766,760 + Psyr_1571 0.58 -0.1 1,766,760 + Psyr_1571 0.58 +0.2 1,766,766 + Psyr_1571 0.59 +0.7 1,766,767 - Psyr_1571 0.59 -0.7 1,766,767 - Psyr_1571 0.59 -0.0 1,766,767 - Psyr_1571 0.59 -0.0 1,766,767 - Psyr_1571 0.59 +0.3 1,766,907 + Psyr_1571 0.66 +0.2 1,766,907 + Psyr_1571 0.66 -0.0 1,766,907 + Psyr_1571 0.66 +1.1 1,766,908 - Psyr_1571 0.67 +0.2 1,766,908 - Psyr_1571 0.67 -0.5 1,766,908 - Psyr_1571 0.67 +1.9 1,766,910 + Psyr_1571 0.67 +0.9 1,766,910 + Psyr_1571 0.67 +1.5 1,767,081 + Psyr_1571 0.76 +1.7 1,767,087 + Psyr_1571 0.77 +0.9 1,767,087 + Psyr_1571 0.77 +0.7 1,767,088 - Psyr_1571 0.77 +1.7 1,767,088 - Psyr_1571 0.77 +1.3 1,767,123 + Psyr_1571 0.79 +0.5 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 +1.0 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 +1.7 1,767,123 + Psyr_1571 0.79 +0.3 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 +0.2 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 -0.7 1,767,123 + Psyr_1571 0.79 -0.5 1,767,123 + Psyr_1571 0.79 -1.1 1,767,123 + Psyr_1571 0.79 +0.3 1,767,123 + Psyr_1571 0.79 -2.0 1,767,123 + Psyr_1571 0.79 +0.3 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 +0.5 1,767,123 + Psyr_1571 0.79 +0.2 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 -0.6 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 +0.5 1,767,123 + Psyr_1571 0.79 +0.4 1,767,123 + Psyr_1571 0.79 +1.2 1,767,123 + Psyr_1571 0.79 +2.1 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 -1.3 1,767,123 + Psyr_1571 0.79 +0.5 1,767,123 + Psyr_1571 0.79 +0.6 1,767,123 + Psyr_1571 0.79 +1.0 1,767,123 + Psyr_1571 0.79 +1.1 1,767,123 + Psyr_1571 0.79 +0.7 1,767,123 + Psyr_1571 0.79 +0.7 1,767,123 + Psyr_1571 0.79 -0.4 1,767,123 + Psyr_1571 0.79 +0.3 1,767,123 + Psyr_1571 0.79 +0.5 1,767,123 + Psyr_1571 0.79 -0.9 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 +0.1 1,767,123 + Psyr_1571 0.79 +0.1 1,767,123 + Psyr_1571 0.79 -0.5 1,767,124 - Psyr_1571 0.79 -0.2 1,767,124 - Psyr_1571 0.79 -0.1 1,767,124 - Psyr_1571 0.79 +0.4 1,767,124 - Psyr_1571 0.79 -0.9 1,767,124 - Psyr_1571 0.79 +0.5 1,767,124 - Psyr_1571 0.79 +1.1 1,767,124 - Psyr_1571 0.79 -0.3 1,767,124 - Psyr_1571 0.79 -0.1 1,767,124 - Psyr_1571 0.79 -1.6 1,767,124 - Psyr_1571 0.79 +0.1 1,767,124 - Psyr_1571 0.79 -0.4 1,767,124 - Psyr_1571 0.79 +0.7 1,767,124 - Psyr_1571 0.79 -0.5 1,767,124 - Psyr_1571 0.79 -0.2 1,767,124 - Psyr_1571 0.79 +0.8 1,767,124 - Psyr_1571 0.79 -0.2 1,767,124 - Psyr_1571 0.79 +1.0 1,767,124 - Psyr_1571 0.79 +1.0 1,767,124 - Psyr_1571 0.79 +2.0 1,767,124 - Psyr_1571 0.79 -0.5 1,767,124 - Psyr_1571 0.79 +0.3 1,767,124 - Psyr_1571 0.79 +0.1 1,767,124 - Psyr_1571 0.79 -0.0 1,767,124 - Psyr_1571 0.79 -0.6 1,767,124 - Psyr_1571 0.79 +1.9 1,767,124 - Psyr_1571 0.79 +0.3 1,767,124 - Psyr_1571 0.79 -0.3 1,767,124 - Psyr_1571 0.79 -0.3 1,767,124 - Psyr_1571 0.79 -0.0 1,767,124 - Psyr_1571 0.79 -0.1 1,767,124 - Psyr_1571 0.79 -0.0 1,767,124 - Psyr_1571 0.79 +0.4 1,767,124 - Psyr_1571 0.79 -0.6 1,767,124 - Psyr_1571 0.79 -0.2 1,767,124 - Psyr_1571 0.79 +1.1 1,767,354 + +0.3 1,767,354 + +0.6 1,767,354 + +0.7 1,767,354 + -1.3 1,767,354 + -1.6 1,767,354 + -0.3 1,767,355 - -0.1 1,767,355 - -0.3 1,767,355 - +0.0 1,767,355 - +1.4 1,767,355 - -1.0 1,767,355 - +1.9 1,767,355 - -0.3 1,767,355 - +0.6 1,767,683 + Psyr_1572 0.25 -0.0 1,767,683 + Psyr_1572 0.25 +0.6 1,767,683 + Psyr_1572 0.25 +1.1 1,767,684 - Psyr_1572 0.25 +0.1 1,767,684 - Psyr_1572 0.25 -0.8 1,767,725 + Psyr_1572 0.36 +0.3 1,767,725 + Psyr_1572 0.36 +0.5 1,767,726 - Psyr_1572 0.37 -0.5 1,767,793 + Psyr_1572 0.54 +0.5 1,767,794 - Psyr_1572 0.55 -1.3 1,767,858 - Psyr_1572 0.72 -0.9 1,767,858 - Psyr_1572 0.72 +0.6 1,767,858 - Psyr_1572 0.72 +0.1 1,767,937 - -0.9 1,768,048 + -0.0 1,768,048 + +0.4 1,768,049 - -0.1 1,768,049 - +0.0 1,768,049 - -0.5 1,768,049 - +0.2 1,768,049 - +1.3 1,768,194 + Psyr_1573 0.34 -1.2 1,768,194 + Psyr_1573 0.34 -0.7 1,768,195 - Psyr_1573 0.35 -0.3 1,768,195 - Psyr_1573 0.35 +0.5 1,768,389 + Psyr_1573 0.75 -0.6 1,768,401 - Psyr_1573 0.78 +0.4 1,768,414 - Psyr_1573 0.81 -0.1 1,768,509 + -0.9 1,768,509 + -0.2 1,768,509 + -0.9 1,768,509 + -0.0 1,768,509 + -0.7 1,768,509 + -0.6 1,768,509 + -0.0 1,768,510 - -0.3 1,768,556 + -0.6 1,768,559 + -0.2 1,768,559 + -1.7 1,768,559 + +0.4 1,768,559 + -0.2 1,768,560 - +0.7 1,768,560 - -0.3 1,768,602 - -0.4 1,768,602 - +1.0 1,768,612 + +0.7 1,768,612 + -0.4 1,768,612 + -0.1 1,768,612 + +0.5 1,768,735 + +0.7 1,768,782 + -1.8 1,768,860 + Psyr_1574 0.13 +1.1 1,768,861 - Psyr_1574 0.13 -1.0 1,768,861 - Psyr_1574 0.13 +2.7 1,768,943 + Psyr_1574 0.17 +0.7 1,768,943 + Psyr_1574 0.17 +0.4 1,768,944 - Psyr_1574 0.18 +0.2 1,768,944 - Psyr_1574 0.18 +0.3 1,768,944 - Psyr_1574 0.18 -1.0 1,768,944 - Psyr_1574 0.18 +0.4
Or see this region's nucleotide sequence