Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1551

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1549 and Psyr_1550 are separated by 0 nucleotidesPsyr_1550 and Psyr_1551 are separated by 28 nucleotidesPsyr_1551 and Psyr_RNA25 are separated by 92 nucleotidesPsyr_RNA25 and Psyr_1552 are separated by 58 nucleotides Psyr_1549: Psyr_1549 - lipoprotein, putative, at 1,742,241 to 1,743,359 _1549 Psyr_1550: Psyr_1550 - Beta-lactamase-like protein, at 1,743,360 to 1,744,118 _1550 Psyr_1551: Psyr_1551 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,744,147 to 1,744,857 _1551 Psyr_RNA25: Psyr_RNA25 - tRNA-Ser, at 1,744,950 to 1,745,039 _RNA25 Psyr_1552: Psyr_1552 - CDS, at 1,745,098 to 1,745,496 _1552 Position (kb) 1744 1745Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1743.422 kb on + strandat 1743.423 kb on - strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.427 kb on - strandat 1743.430 kb on + strandat 1743.514 kb on + strand, within Psyr_1550at 1743.514 kb on + strand, within Psyr_1550at 1743.588 kb on + strand, within Psyr_1550at 1743.588 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.799 kb on + strand, within Psyr_1550at 1743.799 kb on + strand, within Psyr_1550at 1744.125 kb on + strandat 1744.125 kb on + strandat 1744.129 kb on + strandat 1744.129 kb on + strandat 1744.129 kb on + strandat 1744.856 kb on - strandat 1744.935 kb on - strandat 1744.996 kb on + strand, within Psyr_RNA25at 1744.997 kb on - strand, within Psyr_RNA25at 1745.012 kb on + strand, within Psyr_RNA25at 1745.040 kb on + strandat 1745.046 kb on + strandat 1745.080 kb on + strandat 1745.114 kb on - strandat 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.262 kb on + strand, within Psyr_1552at 1745.262 kb on + strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.277 kb on + strand, within Psyr_1552at 1745.316 kb on + strand, within Psyr_1552at 1745.317 kb on - strand, within Psyr_1552at 1745.498 kb on + strandat 1745.498 kb on + strandat 1745.514 kb on - strandat 1745.550 kb on + strandat 1745.550 kb on + strandat 1745.550 kb on + strandat 1745.551 kb on - strandat 1745.551 kb on - strandat 1745.551 kb on - strandat 1745.584 kb on + strandat 1745.613 kb on + strandat 1745.638 kb on + strandat 1745.638 kb on + strandat 1745.639 kb on - strandat 1745.656 kb on - strandat 1745.688 kb on + strandat 1745.784 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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1,743,422 + +0.0
1,743,423 - -0.3
1,743,426 + -0.8
1,743,426 + -1.3
1,743,426 + +1.2
1,743,426 + +1.5
1,743,426 + -0.6
1,743,426 + -0.1
1,743,426 + -0.6
1,743,426 + -0.6
1,743,426 + +0.3
1,743,426 + -0.5
1,743,426 + -0.5
1,743,426 + +1.0
1,743,426 + -1.5
1,743,426 + +0.3
1,743,426 + +0.4
1,743,427 - +0.7
1,743,430 + +0.8
1,743,514 + Psyr_1550 0.20 +0.1
1,743,514 + Psyr_1550 0.20 +1.7
1,743,588 + Psyr_1550 0.30 +1.1
1,743,588 + Psyr_1550 0.30 +1.4
1,743,796 + Psyr_1550 0.57 -0.3
1,743,796 + Psyr_1550 0.57 -0.8
1,743,796 + Psyr_1550 0.57 +0.8
1,743,796 + Psyr_1550 0.57 -0.0
1,743,796 + Psyr_1550 0.57 -0.3
1,743,796 + Psyr_1550 0.57 -0.0
1,743,796 + Psyr_1550 0.57 +1.0
1,743,799 + Psyr_1550 0.58 -0.4
1,743,799 + Psyr_1550 0.58 +0.1
1,744,125 + -0.5
1,744,125 + -0.2
1,744,129 + +3.2
1,744,129 + +0.4
1,744,129 + +0.2
1,744,856 - -0.3
1,744,935 - +0.2
1,744,996 + Psyr_RNA25 0.51 -1.9
1,744,997 - Psyr_RNA25 0.52 -2.8
1,745,012 + Psyr_RNA25 0.69 -1.9
1,745,040 + -0.0
1,745,046 + +1.0
1,745,080 + +0.4
1,745,114 - +1.1
1,745,187 + Psyr_1552 0.22 +0.5
1,745,187 + Psyr_1552 0.22 +0.1
1,745,187 + Psyr_1552 0.22 -0.3
1,745,188 - Psyr_1552 0.23 +1.5
1,745,188 - Psyr_1552 0.23 +0.7
1,745,188 - Psyr_1552 0.23 +0.1
1,745,188 - Psyr_1552 0.23 -1.8
1,745,262 + Psyr_1552 0.41 -0.5
1,745,262 + Psyr_1552 0.41 -0.1
1,745,263 - Psyr_1552 0.41 +0.3
1,745,263 - Psyr_1552 0.41 +0.4
1,745,263 - Psyr_1552 0.41 -0.5
1,745,269 + Psyr_1552 0.43 +0.7
1,745,269 + Psyr_1552 0.43 +1.1
1,745,269 + Psyr_1552 0.43 +0.2
1,745,269 + Psyr_1552 0.43 -0.2
1,745,269 + Psyr_1552 0.43 +0.4
1,745,270 - Psyr_1552 0.43 +0.4
1,745,270 - Psyr_1552 0.43 +0.1
1,745,270 - Psyr_1552 0.43 -0.2
1,745,270 - Psyr_1552 0.43 +1.0
1,745,270 - Psyr_1552 0.43 +2.3
1,745,277 + Psyr_1552 0.45 -0.7
1,745,316 + Psyr_1552 0.55 -0.0
1,745,317 - Psyr_1552 0.55 -0.6
1,745,498 + -1.2
1,745,498 + -0.9
1,745,514 - +0.3
1,745,550 + +0.0
1,745,550 + +0.3
1,745,550 + -0.1
1,745,551 - +0.8
1,745,551 - +0.5
1,745,551 - -0.0
1,745,584 + -0.3
1,745,613 + -0.1
1,745,638 + -0.0
1,745,638 + -1.0
1,745,639 - +0.9
1,745,656 - +0.7
1,745,688 + -0.6
1,745,784 + -0.6

Or see this region's nucleotide sequence