Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1423 and Psyr_1424 are separated by 113 nucleotides Psyr_1424 and Psyr_1425 overlap by 14 nucleotides Psyr_1425 and Psyr_1426 are separated by 655 nucleotides
Psyr_1423: Psyr_1423 - Protein of unknown function DUF159, at 1,611,700 to 1,612,392
_1423
Psyr_1424: Psyr_1424 - Peptidase S24, S26A and S26B, at 1,612,506 to 1,612,940
_1424
Psyr_1425: Psyr_1425 - DNA-directed DNA polymerase, at 1,612,927 to 1,614,207
_1425
Psyr_1426: Psyr_1426 - conserved hypothetical protein, at 1,614,863 to 1,616,401
_1426
Position (kb) 1612
1613
1614
1615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1612.002 kb on + strand, within Psyr_1423 at 1612.002 kb on + strand, within Psyr_1423 at 1612.002 kb on + strand, within Psyr_1423 at 1612.002 kb on + strand, within Psyr_1423 at 1612.002 kb on + strand, within Psyr_1423 at 1612.003 kb on - strand, within Psyr_1423 at 1612.003 kb on - strand, within Psyr_1423 at 1612.003 kb on - strand, within Psyr_1423 at 1612.003 kb on - strand, within Psyr_1423 at 1612.003 kb on - strand, within Psyr_1423 at 1612.032 kb on - strand, within Psyr_1423 at 1612.032 kb on - strand, within Psyr_1423 at 1612.145 kb on - strand, within Psyr_1423 at 1612.272 kb on + strand, within Psyr_1423 at 1612.272 kb on + strand, within Psyr_1423 at 1612.272 kb on + strand, within Psyr_1423 at 1612.286 kb on + strand, within Psyr_1423 at 1612.287 kb on - strand, within Psyr_1423 at 1612.294 kb on + strand, within Psyr_1423 at 1612.295 kb on - strand, within Psyr_1423 at 1612.295 kb on - strand, within Psyr_1423 at 1612.353 kb on - strand at 1612.371 kb on - strand at 1612.371 kb on - strand at 1612.470 kb on + strand at 1612.474 kb on + strand at 1612.491 kb on - strand at 1612.491 kb on - strand at 1612.491 kb on - strand at 1612.514 kb on - strand at 1612.514 kb on - strand at 1612.514 kb on - strand at 1612.514 kb on - strand at 1612.605 kb on + strand, within Psyr_1424 at 1612.605 kb on + strand, within Psyr_1424 at 1612.781 kb on + strand, within Psyr_1424 at 1612.781 kb on + strand, within Psyr_1424 at 1612.848 kb on - strand, within Psyr_1424 at 1612.903 kb on + strand at 1612.911 kb on + strand at 1612.911 kb on + strand at 1612.911 kb on + strand at 1612.976 kb on - strand at 1612.976 kb on - strand at 1612.976 kb on - strand at 1612.976 kb on - strand at 1613.161 kb on + strand, within Psyr_1425 at 1613.161 kb on + strand, within Psyr_1425 at 1613.161 kb on + strand, within Psyr_1425 at 1613.161 kb on + strand, within Psyr_1425 at 1613.161 kb on + strand, within Psyr_1425 at 1613.161 kb on + strand, within Psyr_1425 at 1613.161 kb on + strand, within Psyr_1425 at 1613.161 kb on + strand, within Psyr_1425 at 1613.161 kb on + strand, within Psyr_1425 at 1613.162 kb on - strand, within Psyr_1425 at 1613.162 kb on - strand, within Psyr_1425 at 1613.162 kb on - strand, within Psyr_1425 at 1613.162 kb on - strand, within Psyr_1425 at 1613.162 kb on - strand, within Psyr_1425 at 1613.162 kb on - strand, within Psyr_1425 at 1613.162 kb on - strand, within Psyr_1425 at 1613.170 kb on + strand, within Psyr_1425 at 1613.171 kb on - strand, within Psyr_1425 at 1613.233 kb on + strand, within Psyr_1425 at 1613.233 kb on + strand, within Psyr_1425 at 1613.233 kb on + strand, within Psyr_1425 at 1613.234 kb on - strand, within Psyr_1425 at 1613.234 kb on - strand, within Psyr_1425 at 1613.234 kb on - strand, within Psyr_1425 at 1613.234 kb on - strand, within Psyr_1425 at 1613.234 kb on - strand, within Psyr_1425 at 1613.319 kb on + strand, within Psyr_1425 at 1613.319 kb on + strand, within Psyr_1425 at 1613.320 kb on - strand, within Psyr_1425 at 1613.320 kb on - strand, within Psyr_1425 at 1613.395 kb on - strand, within Psyr_1425 at 1613.395 kb on - strand, within Psyr_1425 at 1613.426 kb on + strand, within Psyr_1425 at 1613.427 kb on - strand, within Psyr_1425 at 1613.466 kb on + strand, within Psyr_1425 at 1613.467 kb on - strand, within Psyr_1425 at 1613.467 kb on - strand, within Psyr_1425 at 1613.470 kb on - strand, within Psyr_1425 at 1613.526 kb on + strand, within Psyr_1425 at 1613.527 kb on - strand, within Psyr_1425 at 1613.572 kb on - strand, within Psyr_1425 at 1613.628 kb on + strand, within Psyr_1425 at 1613.628 kb on + strand, within Psyr_1425 at 1613.628 kb on + strand, within Psyr_1425 at 1613.629 kb on - strand, within Psyr_1425 at 1613.629 kb on - strand, within Psyr_1425 at 1613.743 kb on + strand, within Psyr_1425 at 1613.743 kb on + strand, within Psyr_1425 at 1613.743 kb on + strand, within Psyr_1425 at 1613.743 kb on + strand, within Psyr_1425 at 1613.743 kb on + strand, within Psyr_1425 at 1613.743 kb on + strand, within Psyr_1425 at 1613.743 kb on + strand, within Psyr_1425 at 1613.744 kb on - strand, within Psyr_1425 at 1613.744 kb on - strand, within Psyr_1425 at 1613.744 kb on - strand, within Psyr_1425 at 1613.744 kb on - strand, within Psyr_1425 at 1613.744 kb on - strand, within Psyr_1425 at 1613.845 kb on + strand, within Psyr_1425 at 1613.953 kb on + strand, within Psyr_1425 at 1613.953 kb on + strand, within Psyr_1425 at 1613.953 kb on + strand, within Psyr_1425 at 1613.954 kb on - strand, within Psyr_1425 at 1613.954 kb on - strand, within Psyr_1425 at 1613.954 kb on - strand, within Psyr_1425 at 1614.003 kb on + strand, within Psyr_1425 at 1614.003 kb on + strand, within Psyr_1425 at 1614.004 kb on - strand, within Psyr_1425 at 1614.004 kb on - strand, within Psyr_1425 at 1614.004 kb on - strand, within Psyr_1425 at 1614.075 kb on + strand, within Psyr_1425 at 1614.075 kb on + strand, within Psyr_1425 at 1614.075 kb on + strand, within Psyr_1425 at 1614.076 kb on - strand, within Psyr_1425 at 1614.163 kb on + strand at 1614.164 kb on - strand at 1614.165 kb on + strand at 1614.165 kb on + strand at 1614.166 kb on - strand at 1614.166 kb on - strand at 1614.216 kb on + strand at 1614.217 kb on - strand at 1614.240 kb on + strand at 1614.241 kb on - strand at 1614.241 kb on - strand at 1614.245 kb on + strand at 1614.245 kb on + strand at 1614.246 kb on - strand at 1614.246 kb on - strand at 1614.246 kb on - strand at 1614.246 kb on - strand at 1614.246 kb on - strand at 1614.246 kb on - strand at 1614.303 kb on + strand at 1614.344 kb on + strand at 1614.370 kb on + strand at 1614.370 kb on + strand at 1614.370 kb on + strand at 1614.370 kb on + strand at 1614.371 kb on - strand at 1614.371 kb on - strand at 1614.374 kb on + strand at 1614.374 kb on + strand at 1614.374 kb on + strand at 1614.374 kb on + strand at 1614.375 kb on - strand at 1614.375 kb on - strand at 1614.375 kb on - strand at 1614.382 kb on + strand at 1614.382 kb on + strand at 1614.383 kb on - strand at 1614.407 kb on + strand at 1614.407 kb on + strand at 1614.407 kb on + strand at 1614.408 kb on - strand at 1614.408 kb on - strand at 1614.408 kb on - strand at 1614.475 kb on - strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.526 kb on + strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.527 kb on - strand at 1614.528 kb on + strand at 1614.528 kb on + strand at 1614.528 kb on + strand at 1614.618 kb on + strand at 1614.619 kb on - strand at 1614.700 kb on + strand at 1614.709 kb on + strand at 1614.709 kb on + strand at 1614.710 kb on - strand at 1614.710 kb on - strand at 1614.745 kb on + strand at 1614.746 kb on - strand at 1614.767 kb on + strand at 1614.783 kb on + strand at 1614.785 kb on + strand at 1614.785 kb on + strand at 1614.785 kb on + strand at 1614.785 kb on + strand at 1614.785 kb on + strand at 1614.785 kb on + strand at 1614.785 kb on + strand at 1614.786 kb on - strand at 1614.786 kb on - strand at 1614.786 kb on - strand at 1614.789 kb on + strand at 1614.790 kb on - strand at 1614.893 kb on + strand at 1614.893 kb on + strand at 1614.893 kb on + strand at 1614.894 kb on - strand at 1614.894 kb on - strand at 1614.908 kb on - strand at 1614.923 kb on - strand at 1614.944 kb on - strand at 1614.944 kb on - strand at 1615.016 kb on + strand at 1615.017 kb on - strand, within Psyr_1426 at 1615.019 kb on - strand, within Psyr_1426 at 1615.049 kb on + strand, within Psyr_1426 at 1615.049 kb on + strand, within Psyr_1426 at 1615.049 kb on + strand, within Psyr_1426 at 1615.128 kb on + strand, within Psyr_1426 at 1615.128 kb on + strand, within Psyr_1426 at 1615.150 kb on + strand, within Psyr_1426 at 1615.150 kb on + strand, within Psyr_1426 at 1615.154 kb on + strand, within Psyr_1426
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 1,612,002 + Psyr_1423 0.44 -0.1 1,612,002 + Psyr_1423 0.44 +0.6 1,612,002 + Psyr_1423 0.44 +0.6 1,612,002 + Psyr_1423 0.44 -1.1 1,612,002 + Psyr_1423 0.44 -0.2 1,612,003 - Psyr_1423 0.44 -0.9 1,612,003 - Psyr_1423 0.44 +0.4 1,612,003 - Psyr_1423 0.44 +0.1 1,612,003 - Psyr_1423 0.44 +0.2 1,612,003 - Psyr_1423 0.44 +0.4 1,612,032 - Psyr_1423 0.48 -1.3 1,612,032 - Psyr_1423 0.48 -0.3 1,612,145 - Psyr_1423 0.64 -0.9 1,612,272 + Psyr_1423 0.83 +0.6 1,612,272 + Psyr_1423 0.83 +1.8 1,612,272 + Psyr_1423 0.83 +0.3 1,612,286 + Psyr_1423 0.85 -1.1 1,612,287 - Psyr_1423 0.85 -0.3 1,612,294 + Psyr_1423 0.86 +0.4 1,612,295 - Psyr_1423 0.86 -2.5 1,612,295 - Psyr_1423 0.86 +0.4 1,612,353 - +0.1 1,612,371 - -1.2 1,612,371 - +1.8 1,612,470 + -0.1 1,612,474 + +0.0 1,612,491 - +0.4 1,612,491 - +0.7 1,612,491 - -1.0 1,612,514 - -0.6 1,612,514 - -1.0 1,612,514 - -2.5 1,612,514 - +0.7 1,612,605 + Psyr_1424 0.23 -0.0 1,612,605 + Psyr_1424 0.23 -0.4 1,612,781 + Psyr_1424 0.63 +1.6 1,612,781 + Psyr_1424 0.63 -0.9 1,612,848 - Psyr_1424 0.79 +0.7 1,612,903 + -2.5 1,612,911 + +1.3 1,612,911 + -0.5 1,612,911 + +1.0 1,612,976 - +1.3 1,612,976 - -0.6 1,612,976 - +1.3 1,612,976 - +0.1 1,613,161 + Psyr_1425 0.18 +0.8 1,613,161 + Psyr_1425 0.18 -0.4 1,613,161 + Psyr_1425 0.18 +0.9 1,613,161 + Psyr_1425 0.18 -0.4 1,613,161 + Psyr_1425 0.18 +0.3 1,613,161 + Psyr_1425 0.18 +0.3 1,613,161 + Psyr_1425 0.18 +0.1 1,613,161 + Psyr_1425 0.18 +1.1 1,613,161 + Psyr_1425 0.18 +0.4 1,613,162 - Psyr_1425 0.18 -0.3 1,613,162 - Psyr_1425 0.18 +0.8 1,613,162 - Psyr_1425 0.18 +0.1 1,613,162 - Psyr_1425 0.18 +0.5 1,613,162 - Psyr_1425 0.18 -0.0 1,613,162 - Psyr_1425 0.18 +2.9 1,613,162 - Psyr_1425 0.18 +0.7 1,613,170 + Psyr_1425 0.19 +0.1 1,613,171 - Psyr_1425 0.19 -0.5 1,613,233 + Psyr_1425 0.24 +1.0 1,613,233 + Psyr_1425 0.24 +0.4 1,613,233 + Psyr_1425 0.24 +0.7 1,613,234 - Psyr_1425 0.24 +0.3 1,613,234 - Psyr_1425 0.24 +0.4 1,613,234 - Psyr_1425 0.24 -0.2 1,613,234 - Psyr_1425 0.24 +0.7 1,613,234 - Psyr_1425 0.24 +0.3 1,613,319 + Psyr_1425 0.31 -1.0 1,613,319 + Psyr_1425 0.31 -1.8 1,613,320 - Psyr_1425 0.31 -0.5 1,613,320 - Psyr_1425 0.31 +0.5 1,613,395 - Psyr_1425 0.37 +0.5 1,613,395 - Psyr_1425 0.37 -1.1 1,613,426 + Psyr_1425 0.39 +0.0 1,613,427 - Psyr_1425 0.39 -0.7 1,613,466 + Psyr_1425 0.42 +0.3 1,613,467 - Psyr_1425 0.42 -0.2 1,613,467 - Psyr_1425 0.42 -1.0 1,613,470 - Psyr_1425 0.42 +0.4 1,613,526 + Psyr_1425 0.47 -0.1 1,613,527 - Psyr_1425 0.47 -1.7 1,613,572 - Psyr_1425 0.50 +1.7 1,613,628 + Psyr_1425 0.55 +0.3 1,613,628 + Psyr_1425 0.55 +0.4 1,613,628 + Psyr_1425 0.55 +0.5 1,613,629 - Psyr_1425 0.55 -0.0 1,613,629 - Psyr_1425 0.55 -0.7 1,613,743 + Psyr_1425 0.64 +0.2 1,613,743 + Psyr_1425 0.64 -0.0 1,613,743 + Psyr_1425 0.64 +0.1 1,613,743 + Psyr_1425 0.64 -0.3 1,613,743 + Psyr_1425 0.64 +1.4 1,613,743 + Psyr_1425 0.64 -2.0 1,613,743 + Psyr_1425 0.64 -0.1 1,613,744 - Psyr_1425 0.64 +2.7 1,613,744 - Psyr_1425 0.64 -0.5 1,613,744 - Psyr_1425 0.64 -0.9 1,613,744 - Psyr_1425 0.64 +1.0 1,613,744 - Psyr_1425 0.64 -1.6 1,613,845 + Psyr_1425 0.72 +1.3 1,613,953 + Psyr_1425 0.80 +1.1 1,613,953 + Psyr_1425 0.80 +0.1 1,613,953 + Psyr_1425 0.80 +2.3 1,613,954 - Psyr_1425 0.80 +2.7 1,613,954 - Psyr_1425 0.80 -1.0 1,613,954 - Psyr_1425 0.80 +0.1 1,614,003 + Psyr_1425 0.84 -1.8 1,614,003 + Psyr_1425 0.84 -0.5 1,614,004 - Psyr_1425 0.84 -0.4 1,614,004 - Psyr_1425 0.84 +0.2 1,614,004 - Psyr_1425 0.84 +0.1 1,614,075 + Psyr_1425 0.90 +0.9 1,614,075 + Psyr_1425 0.90 +0.9 1,614,075 + Psyr_1425 0.90 +0.4 1,614,076 - Psyr_1425 0.90 -0.1 1,614,163 + +1.1 1,614,164 - +0.6 1,614,165 + -0.1 1,614,165 + -0.0 1,614,166 - +1.4 1,614,166 - -0.1 1,614,216 + +0.8 1,614,217 - -0.3 1,614,240 + +0.4 1,614,241 - -0.0 1,614,241 - -2.5 1,614,245 + -3.5 1,614,245 + +2.5 1,614,246 - -1.0 1,614,246 - -0.7 1,614,246 - +0.9 1,614,246 - +0.7 1,614,246 - +0.7 1,614,246 - +0.3 1,614,303 + -0.8 1,614,344 + +2.1 1,614,370 + -1.1 1,614,370 + +0.3 1,614,370 + -0.1 1,614,370 + -0.9 1,614,371 - -0.3 1,614,371 - +1.0 1,614,374 + -1.1 1,614,374 + +0.3 1,614,374 + -1.0 1,614,374 + +1.2 1,614,375 - +1.9 1,614,375 - +0.3 1,614,375 - -2.2 1,614,382 + +0.9 1,614,382 + +0.4 1,614,383 - +0.2 1,614,407 + +0.0 1,614,407 + -0.0 1,614,407 + +0.7 1,614,408 - -1.3 1,614,408 - -0.3 1,614,408 - -1.3 1,614,475 - -1.9 1,614,526 + -0.6 1,614,526 + -2.5 1,614,526 + -0.5 1,614,526 + +0.8 1,614,526 + -0.4 1,614,526 + -0.3 1,614,526 + -0.5 1,614,526 + +2.1 1,614,526 + +0.4 1,614,526 + +0.5 1,614,526 + +0.1 1,614,526 + +1.3 1,614,526 + -0.1 1,614,526 + +0.2 1,614,526 + +0.1 1,614,526 + -0.9 1,614,526 + -1.0 1,614,526 + +2.7 1,614,526 + +0.2 1,614,526 + +0.0 1,614,526 + -0.9 1,614,527 - -1.7 1,614,527 - -1.5 1,614,527 - -1.3 1,614,527 - +1.1 1,614,527 - -1.6 1,614,527 - -2.6 1,614,527 - +0.4 1,614,527 - +1.0 1,614,527 - -0.2 1,614,527 - -1.6 1,614,527 - +0.2 1,614,527 - -2.7 1,614,527 - -0.3 1,614,527 - +1.4 1,614,527 - +0.5 1,614,528 + -0.4 1,614,528 + +2.3 1,614,528 + +0.4 1,614,618 + +0.3 1,614,619 - +1.9 1,614,700 + +0.9 1,614,709 + +0.4 1,614,709 + +0.4 1,614,710 - -0.3 1,614,710 - -0.9 1,614,745 + -0.0 1,614,746 - -1.0 1,614,767 + +0.7 1,614,783 + +0.4 1,614,785 + +0.7 1,614,785 + +0.0 1,614,785 + +1.9 1,614,785 + +0.4 1,614,785 + -0.1 1,614,785 + -0.1 1,614,785 + +0.9 1,614,786 - -0.7 1,614,786 - -1.1 1,614,786 - +1.4 1,614,789 + -1.5 1,614,790 - +0.3 1,614,893 + +1.0 1,614,893 + +0.2 1,614,893 + +1.8 1,614,894 - -0.1 1,614,894 - -2.0 1,614,908 - -0.9 1,614,923 - -0.2 1,614,944 - +1.9 1,614,944 - -2.1 1,615,016 + -0.3 1,615,017 - Psyr_1426 0.10 -0.6 1,615,019 - Psyr_1426 0.10 +0.0 1,615,049 + Psyr_1426 0.12 +1.1 1,615,049 + Psyr_1426 0.12 +0.4 1,615,049 + Psyr_1426 0.12 -0.3 1,615,128 + Psyr_1426 0.17 +0.6 1,615,128 + Psyr_1426 0.17 +1.4 1,615,150 + Psyr_1426 0.19 -0.2 1,615,150 + Psyr_1426 0.19 -0.2 1,615,154 + Psyr_1426 0.19 -2.2
Or see this region's nucleotide sequence