Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1149

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
1,299,281	-		Psyr_1148	0.13	+0.2
1,299,309	-		Psyr_1148	0.15	-1.0
1,299,525	-		Psyr_1148	0.37	+0.0
1,299,716	+		Psyr_1148	0.55	+0.5
1,299,717	-		Psyr_1148	0.55	+0.7
1,299,776	+		Psyr_1148	0.61	-1.2
1,299,776	+		Psyr_1148	0.61	+0.2
1,299,777	-		Psyr_1148	0.61	-1.8
1,299,777	-		Psyr_1148	0.61	-0.4
1,299,777	-		Psyr_1148	0.61	-0.5
1,299,777	-		Psyr_1148	0.61	+0.7
1,299,777	-		Psyr_1148	0.61	-0.8
1,300,018	+		Psyr_1148	0.85	+0.2
1,300,040	+		Psyr_1148	0.87	-0.3
1,300,040	+		Psyr_1148	0.87	-0.1
1,300,041	-		Psyr_1148	0.87	+0.5
1,300,064	+		Psyr_1148	0.89	+0.2
1,300,064	+		Psyr_1148	0.89	-1.0
1,300,065	-		Psyr_1148	0.90	+1.2
1,300,103	+				-0.6
1,300,103	+				-0.1
1,300,103	+				-2.8
1,300,103	+				-0.6
1,300,104	-				+0.5
1,300,104	-				-1.0
1,300,317	+				+0.3
1,300,319	+				-0.0
1,300,319	+				+0.7
1,300,319	+				-0.1
1,300,320	-				+1.1
1,300,320	-				+0.7
1,300,361	+		Psyr_1149	0.13	-2.0
1,300,362	-		Psyr_1149	0.13	+1.8
1,300,412	+		Psyr_1149	0.19	-0.8
1,300,412	+		Psyr_1149	0.19	+0.7
1,300,413	-		Psyr_1149	0.19	+0.8
1,300,413	-		Psyr_1149	0.19	-0.4
1,300,413	-		Psyr_1149	0.19	-1.1
1,300,454	+		Psyr_1149	0.23	-0.2
1,300,454	+		Psyr_1149	0.23	+0.3
1,300,454	+		Psyr_1149	0.23	+0.2
1,300,575	-		Psyr_1149	0.35	+1.2
1,300,575	-		Psyr_1149	0.35	-0.3
1,300,593	-		Psyr_1149	0.37	-1.2
1,300,682	+		Psyr_1149	0.46	+2.4
1,300,683	-		Psyr_1149	0.46	+0.2
1,300,756	+		Psyr_1149	0.53	+0.3
1,300,862	+		Psyr_1149	0.64	-0.5
1,300,862	+		Psyr_1149	0.64	-0.9
1,300,862	+		Psyr_1149	0.64	+0.1
1,300,862	+		Psyr_1149	0.64	+0.6
1,300,862	+		Psyr_1149	0.64	-1.9
1,300,862	+		Psyr_1149	0.64	+1.3
1,300,863	-		Psyr_1149	0.64	-0.1
1,300,863	-		Psyr_1149	0.64	+0.5
1,300,863	-		Psyr_1149	0.64	+0.2
1,300,863	-		Psyr_1149	0.64	+0.4
1,300,863	-		Psyr_1149	0.64	+1.3
1,300,863	-		Psyr_1149	0.64	-2.6
1,300,982	+		Psyr_1149	0.76	-0.2
1,301,115	+		Psyr_1149	0.89	+1.4
1,301,115	+		Psyr_1149	0.89	+0.7
1,301,115	+		Psyr_1149	0.89	+0.2
1,301,138	+				+0.4
1,301,139	-				+0.7
1,301,235	+				+0.8
1,301,235	+				+0.2
1,301,235	+				-1.1
1,301,235	+				-0.6
1,301,236	-				-0.3
1,301,236	-				+0.1
1,301,236	-				+0.3
1,301,236	-				+1.1
1,301,236	-				+0.5
1,301,236	-				-0.6
1,301,236	-				-0.0
1,301,254	+				+0.1
1,301,255	-				+1.0
1,301,265	+				-1.4
1,301,266	-				-0.3
1,301,284	+				+0.2
1,301,284	+				+0.9
1,301,284	+				+0.7
1,301,284	+				+0.5
1,301,284	+				-0.9
1,301,285	-				+0.3
1,301,322	+				+0.3
1,301,885	-		Psyr_1150	0.30	+0.7