Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1062 and Psyr_1063 are separated by 100 nucleotides Psyr_1063 and Psyr_1064 are separated by 815 nucleotides
Psyr_1062: Psyr_1062 - alginate biosynthesis protein Alg8, at 1,203,142 to 1,204,623
_1062
Psyr_1063: Psyr_1063 - GDP-mannose 6-dehydrogenase, at 1,204,724 to 1,206,040
_1063
Psyr_1064: Psyr_1064 - Protein of unknown function DUF328, at 1,206,856 to 1,207,635
_1064
Position (kb) 1204
1205
1206
1207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1203.950 kb on + strand, within Psyr_1062 at 1203.950 kb on + strand, within Psyr_1062 at 1203.951 kb on - strand, within Psyr_1062 at 1204.304 kb on + strand, within Psyr_1062 at 1204.304 kb on + strand, within Psyr_1062 at 1204.305 kb on - strand, within Psyr_1062 at 1204.305 kb on - strand, within Psyr_1062 at 1204.424 kb on + strand, within Psyr_1062 at 1204.502 kb on - strand at 1204.502 kb on - strand at 1204.502 kb on - strand at 1204.503 kb on + strand at 1204.503 kb on + strand at 1204.504 kb on - strand at 1204.504 kb on - strand at 1204.537 kb on - strand at 1204.571 kb on - strand at 1204.571 kb on - strand at 1204.574 kb on + strand at 1204.574 kb on + strand at 1204.574 kb on + strand at 1204.574 kb on + strand at 1204.575 kb on - strand at 1204.575 kb on - strand at 1204.597 kb on + strand at 1204.635 kb on + strand at 1204.635 kb on + strand at 1204.635 kb on + strand at 1204.636 kb on - strand at 1204.735 kb on + strand at 1204.735 kb on + strand at 1204.938 kb on + strand, within Psyr_1063 at 1204.938 kb on + strand, within Psyr_1063 at 1204.938 kb on + strand, within Psyr_1063 at 1204.939 kb on - strand, within Psyr_1063 at 1204.939 kb on - strand, within Psyr_1063 at 1204.968 kb on + strand, within Psyr_1063 at 1204.968 kb on + strand, within Psyr_1063 at 1205.033 kb on + strand, within Psyr_1063 at 1205.034 kb on - strand, within Psyr_1063 at 1205.109 kb on + strand, within Psyr_1063 at 1205.153 kb on - strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.271 kb on + strand, within Psyr_1063 at 1205.272 kb on - strand, within Psyr_1063 at 1205.272 kb on - strand, within Psyr_1063 at 1205.272 kb on - strand, within Psyr_1063 at 1205.272 kb on - strand, within Psyr_1063 at 1205.272 kb on - strand, within Psyr_1063 at 1205.272 kb on - strand, within Psyr_1063 at 1205.272 kb on - strand, within Psyr_1063 at 1205.272 kb on - strand, within Psyr_1063 at 1205.275 kb on - strand, within Psyr_1063 at 1205.409 kb on + strand, within Psyr_1063 at 1205.409 kb on + strand, within Psyr_1063 at 1205.410 kb on - strand, within Psyr_1063 at 1205.470 kb on - strand, within Psyr_1063 at 1205.539 kb on - strand, within Psyr_1063 at 1205.539 kb on - strand, within Psyr_1063 at 1205.554 kb on + strand, within Psyr_1063 at 1205.686 kb on + strand, within Psyr_1063 at 1205.748 kb on + strand, within Psyr_1063 at 1205.748 kb on + strand, within Psyr_1063 at 1205.749 kb on - strand, within Psyr_1063 at 1205.749 kb on - strand, within Psyr_1063 at 1205.839 kb on + strand, within Psyr_1063 at 1205.906 kb on - strand, within Psyr_1063 at 1205.963 kb on + strand at 1205.963 kb on + strand at 1205.964 kb on - strand at 1205.964 kb on - strand at 1206.012 kb on + strand at 1206.026 kb on + strand at 1206.026 kb on + strand at 1206.026 kb on + strand at 1206.027 kb on - strand at 1206.067 kb on + strand at 1206.151 kb on + strand at 1206.179 kb on + strand at 1206.200 kb on + strand at 1206.200 kb on + strand at 1206.201 kb on - strand at 1206.201 kb on - strand at 1206.217 kb on + strand at 1206.217 kb on + strand at 1206.260 kb on + strand at 1206.388 kb on + strand at 1206.388 kb on + strand at 1206.388 kb on + strand at 1206.388 kb on + strand at 1206.402 kb on + strand at 1206.402 kb on + strand at 1206.479 kb on + strand at 1206.480 kb on - strand at 1206.480 kb on - strand at 1206.480 kb on - strand at 1206.480 kb on - strand at 1206.491 kb on + strand at 1206.492 kb on - strand at 1206.492 kb on - strand at 1206.521 kb on + strand at 1206.522 kb on - strand at 1206.522 kb on - strand at 1206.543 kb on + strand at 1206.543 kb on + strand at 1206.598 kb on + strand at 1206.598 kb on + strand at 1206.598 kb on + strand at 1206.599 kb on - strand at 1206.642 kb on + strand at 1206.642 kb on + strand at 1206.750 kb on - strand at 1206.809 kb on + strand at 1206.857 kb on + strand at 1206.857 kb on + strand at 1206.858 kb on - strand at 1206.931 kb on + strand at 1206.932 kb on - strand at 1206.932 kb on - strand at 1206.932 kb on - strand at 1206.946 kb on + strand, within Psyr_1064 at 1206.947 kb on - strand, within Psyr_1064 at 1206.947 kb on - strand, within Psyr_1064 at 1206.976 kb on + strand, within Psyr_1064 at 1206.976 kb on + strand, within Psyr_1064 at 1206.976 kb on + strand, within Psyr_1064 at 1206.976 kb on + strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1207.017 kb on - strand, within Psyr_1064 at 1207.017 kb on - strand, within Psyr_1064 at 1207.034 kb on + strand, within Psyr_1064 at 1207.035 kb on - strand, within Psyr_1064
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 1,203,950 + Psyr_1062 0.55 +0.6 1,203,950 + Psyr_1062 0.55 -0.2 1,203,951 - Psyr_1062 0.55 +1.3 1,204,304 + Psyr_1062 0.78 +0.2 1,204,304 + Psyr_1062 0.78 -0.6 1,204,305 - Psyr_1062 0.78 -0.1 1,204,305 - Psyr_1062 0.78 -0.7 1,204,424 + Psyr_1062 0.87 +1.0 1,204,502 - -0.4 1,204,502 - -0.3 1,204,502 - -1.4 1,204,503 + +0.0 1,204,503 + +1.7 1,204,504 - -1.4 1,204,504 - +2.1 1,204,537 - -0.1 1,204,571 - -0.3 1,204,571 - +1.5 1,204,574 + +0.3 1,204,574 + +0.3 1,204,574 + +0.0 1,204,574 + -0.0 1,204,575 - -1.6 1,204,575 - -0.1 1,204,597 + -0.9 1,204,635 + -0.0 1,204,635 + -0.1 1,204,635 + -0.7 1,204,636 - -0.6 1,204,735 + -0.0 1,204,735 + +0.6 1,204,938 + Psyr_1063 0.16 +0.1 1,204,938 + Psyr_1063 0.16 +0.4 1,204,938 + Psyr_1063 0.16 -1.3 1,204,939 - Psyr_1063 0.16 +2.5 1,204,939 - Psyr_1063 0.16 -0.6 1,204,968 + Psyr_1063 0.19 +1.1 1,204,968 + Psyr_1063 0.19 -1.3 1,205,033 + Psyr_1063 0.23 +0.1 1,205,034 - Psyr_1063 0.24 +1.7 1,205,109 + Psyr_1063 0.29 +0.0 1,205,153 - Psyr_1063 0.33 +0.2 1,205,271 + Psyr_1063 0.42 +0.2 1,205,271 + Psyr_1063 0.42 -0.3 1,205,271 + Psyr_1063 0.42 -0.2 1,205,271 + Psyr_1063 0.42 -0.1 1,205,271 + Psyr_1063 0.42 +1.1 1,205,271 + Psyr_1063 0.42 +0.3 1,205,271 + Psyr_1063 0.42 +0.1 1,205,271 + Psyr_1063 0.42 -0.0 1,205,271 + Psyr_1063 0.42 +0.9 1,205,271 + Psyr_1063 0.42 -1.3 1,205,271 + Psyr_1063 0.42 +0.9 1,205,271 + Psyr_1063 0.42 +0.5 1,205,271 + Psyr_1063 0.42 -1.0 1,205,271 + Psyr_1063 0.42 -0.9 1,205,271 + Psyr_1063 0.42 -0.9 1,205,271 + Psyr_1063 0.42 +0.1 1,205,272 - Psyr_1063 0.42 +0.4 1,205,272 - Psyr_1063 0.42 +0.1 1,205,272 - Psyr_1063 0.42 +0.1 1,205,272 - Psyr_1063 0.42 +0.7 1,205,272 - Psyr_1063 0.42 +0.7 1,205,272 - Psyr_1063 0.42 +0.4 1,205,272 - Psyr_1063 0.42 +0.6 1,205,272 - Psyr_1063 0.42 +0.6 1,205,275 - Psyr_1063 0.42 -0.7 1,205,409 + Psyr_1063 0.52 -0.9 1,205,409 + Psyr_1063 0.52 +0.5 1,205,410 - Psyr_1063 0.52 +0.9 1,205,470 - Psyr_1063 0.57 -0.3 1,205,539 - Psyr_1063 0.62 -0.3 1,205,539 - Psyr_1063 0.62 -0.2 1,205,554 + Psyr_1063 0.63 -0.6 1,205,686 + Psyr_1063 0.73 -0.4 1,205,748 + Psyr_1063 0.78 +0.1 1,205,748 + Psyr_1063 0.78 +0.5 1,205,749 - Psyr_1063 0.78 -0.5 1,205,749 - Psyr_1063 0.78 -0.4 1,205,839 + Psyr_1063 0.85 -1.0 1,205,906 - Psyr_1063 0.90 -0.5 1,205,963 + +0.4 1,205,963 + +0.2 1,205,964 - -1.0 1,205,964 - -0.1 1,206,012 + -0.7 1,206,026 + +0.7 1,206,026 + -0.8 1,206,026 + -0.3 1,206,027 - +0.1 1,206,067 + +0.7 1,206,151 + -0.3 1,206,179 + +2.1 1,206,200 + +0.9 1,206,200 + -1.1 1,206,201 - -1.2 1,206,201 - +0.0 1,206,217 + -0.5 1,206,217 + -3.5 1,206,260 + +1.5 1,206,388 + +0.9 1,206,388 + +1.3 1,206,388 + +0.7 1,206,388 + -1.4 1,206,402 + -0.4 1,206,402 + -0.0 1,206,479 + -0.4 1,206,480 - -0.7 1,206,480 - -0.6 1,206,480 - +0.5 1,206,480 - +1.1 1,206,491 + -0.3 1,206,492 - +2.5 1,206,492 - +3.3 1,206,521 + +0.6 1,206,522 - +1.6 1,206,522 - +1.1 1,206,543 + -0.6 1,206,543 + +0.6 1,206,598 + -0.0 1,206,598 + +0.9 1,206,598 + -0.4 1,206,599 - +1.1 1,206,642 + -0.3 1,206,642 + -0.2 1,206,750 - +1.5 1,206,809 + -0.7 1,206,857 + -0.3 1,206,857 + -0.3 1,206,858 - -0.6 1,206,931 + -1.7 1,206,932 - -1.4 1,206,932 - -0.3 1,206,932 - -0.0 1,206,946 + Psyr_1064 0.12 -0.6 1,206,947 - Psyr_1064 0.12 -2.0 1,206,947 - Psyr_1064 0.12 +1.1 1,206,976 + Psyr_1064 0.15 -0.3 1,206,976 + Psyr_1064 0.15 -1.6 1,206,976 + Psyr_1064 0.15 -1.5 1,206,976 + Psyr_1064 0.15 -0.1 1,206,977 - Psyr_1064 0.16 +0.3 1,206,977 - Psyr_1064 0.16 -1.9 1,206,977 - Psyr_1064 0.16 +1.5 1,207,017 - Psyr_1064 0.21 +0.3 1,207,017 - Psyr_1064 0.21 -1.3 1,207,034 + Psyr_1064 0.23 +0.4 1,207,035 - Psyr_1064 0.23 +0.4
Or see this region's nucleotide sequence