Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0792

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
898,305	+		Psyr_0790	0.85	-0.7
898,305	+		Psyr_0790	0.85	+0.0
898,305	+		Psyr_0790	0.85	-0.2
898,305	+		Psyr_0790	0.85	-0.5
898,305	+		Psyr_0790	0.85	-2.8
898,306	-		Psyr_0790	0.85	+0.0
898,306	-		Psyr_0790	0.85	-0.2
898,306	-		Psyr_0790	0.85	+0.0
898,306	-		Psyr_0790	0.85	-0.7
898,323	+		Psyr_0790	0.86	-0.6
898,324	-		Psyr_0790	0.87	+0.6
898,324	-		Psyr_0790	0.87	-1.3
898,373	-				+0.3
898,373	-				+0.4
898,373	-				+0.5
898,373	-				-1.1
898,486	+				+0.8
898,486	+				+0.3
898,487	-				-0.4
898,499	-				-1.0
898,518	+				-0.7
898,566	-				+0.4
898,584	-				-0.0
898,655	+				+0.9
898,656	-				-1.4
898,656	-				-1.0
898,705	-				+0.2
898,805	+		Psyr_0791	0.17	-0.8
898,805	+		Psyr_0791	0.17	+0.9
899,248	+				+0.4
899,249	-				+0.6
899,293	-				+0.8
899,385	-		Psyr_0792	0.22	-1.2
899,515	-		Psyr_0792	0.43	+0.0
899,515	-		Psyr_0792	0.43	+0.2
899,575	+		Psyr_0792	0.52	-2.7
899,576	-		Psyr_0792	0.53	+0.2
899,638	-		Psyr_0792	0.62	+1.8
899,736	+		Psyr_0792	0.78	+0.8
899,737	-		Psyr_0792	0.78	+0.3
899,858	+				-0.2
899,858	+				-1.1
899,859	-				+0.8
899,875	-				-0.0
899,886	+				+0.0
899,886	+				+0.8
899,930	-				+0.1
899,930	-				-0.0
899,930	-				+0.5
900,100	+		Psyr_0793	0.27	-0.6
900,101	-		Psyr_0793	0.27	-1.4
900,112	+		Psyr_0793	0.30	+0.9
900,112	+		Psyr_0793	0.30	-0.2
900,112	+		Psyr_0793	0.30	-1.0
900,113	-		Psyr_0793	0.30	-0.1
900,302	-		Psyr_0793	0.68	+0.9
900,350	-		Psyr_0793	0.77	+1.1
900,367	-		Psyr_0793	0.81	+0.3
900,380	+		Psyr_0793	0.83	-0.4
900,456	+				-0.4
900,456	+				+0.2
900,456	+				+1.0
900,456	+				-1.8
900,456	+				-0.2
900,457	-				-1.1
900,457	-				-0.2
900,457	-				+0.1
900,457	-				-1.4
900,457	-				-0.2
900,457	-				-0.1
900,457	-				+1.2
900,469	+				-1.1
900,469	+				+0.6
900,550	+				-0.5
900,558	+				+0.5
900,558	+				-1.0
900,559	-				+0.4
900,559	-				+0.3
900,559	-				-1.2
900,559	-				-1.0
900,559	-				+0.1
900,559	-				-0.4
900,559	-				-0.6
900,559	-				-0.8
900,560	+				+0.2
900,560	+				-0.2
900,818	+				-0.3
900,819	-				+0.6
900,819	-				+0.2