Strain Fitness in Agrobacterium fabrum C58 around Atu1378

Experiment: R2A with Calcium Chloride Dihydrate 87.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1376 and Atu1377 are separated by 66 nucleotidesAtu1377 and Atu1378 are separated by 64 nucleotidesAtu1378 and Atu1379 overlap by 1 nucleotidesAtu1379 and Atu1380 are separated by 37 nucleotides Atu1376: Atu1376 - uridylate kinase, at 1,370,156 to 1,370,878 Atu1376 Atu1377: Atu1377 - ribosome recycling factor, at 1,370,945 to 1,371,502 Atu1377 Atu1378: Atu1378 - undecaprenyl pyrophosphate synthase, at 1,371,567 to 1,372,310 Atu1378 Atu1379: Atu1379 - phosphatidate cytidylyltransferase, at 1,372,310 to 1,373,143 Atu1379 Atu1380: Atu1380 - zinc metallopeptidase, at 1,373,181 to 1,374,314 Atu1380 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -1 0 1at 1373.097 kb on + strandat 1373.186 kb on + strandat 1373.218 kb on + strandat 1373.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Calcium Chloride Dihydrate 87.5 mM
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1,373,097 + -0.1
1,373,186 + -0.3
1,373,218 + -1.6
1,373,226 - +0.6

Or see this region's nucleotide sequence