Experiment: 3-methyl-2-butenol 0.31 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt plsB and dgkA are separated by 170 nucleotides dgkA and lexA are separated by 109 nucleotides lexA and dinF are separated by 18 nucleotides
b4041: plsB - glycerol-3-phosphate acyltransferase (VIMSS), at 4,252,066 to 4,254,489
plsB
b4042: dgkA - diacylglycerol kinase (NCBI), at 4,254,660 to 4,255,028
dgkA
b4043: lexA - LexA repressor (NCBI), at 4,255,138 to 4,255,746
lexA
b4044: dinF - DNA-damage-inducible SOS response protein (NCBI), at 4,255,765 to 4,257,144
dinF
Position (kb)
4254
4255
4256 Strain fitness (log2 ratio)
-2
-1
0
1 at 4254.489 kb on - strand at 4254.503 kb on - strand at 4254.508 kb on + strand at 4254.508 kb on + strand at 4254.537 kb on - strand at 4254.568 kb on - strand at 4254.588 kb on - strand at 4254.608 kb on + strand at 4254.608 kb on + strand at 4254.618 kb on + strand at 4254.623 kb on + strand at 4254.623 kb on + strand at 4254.626 kb on + strand at 4254.629 kb on - strand at 4254.629 kb on - strand at 4254.681 kb on - strand at 4254.738 kb on - strand, within dgkA at 4254.745 kb on - strand, within dgkA at 4254.745 kb on - strand, within dgkA at 4254.782 kb on - strand, within dgkA at 4254.817 kb on + strand, within dgkA at 4254.824 kb on - strand, within dgkA at 4254.831 kb on + strand, within dgkA at 4254.833 kb on + strand, within dgkA at 4254.870 kb on - strand, within dgkA at 4254.912 kb on + strand, within dgkA at 4255.118 kb on + strand at 4255.916 kb on - strand, within dinF
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-2-butenol 0.31 vol% remove 4,254,489 - -0.2 4,254,503 - -1.7 4,254,508 + -0.8 4,254,508 + -1.7 4,254,537 - +0.0 4,254,568 - +0.6 4,254,588 - +0.3 4,254,608 + +1.1 4,254,608 + -0.0 4,254,618 + +0.4 4,254,623 + -1.1 4,254,623 + -0.1 4,254,626 + +0.0 4,254,629 - +0.6 4,254,629 - -0.9 4,254,681 - -0.5 4,254,738 - dgkA b4042 0.21 -2.0 4,254,745 - dgkA b4042 0.23 -0.8 4,254,745 - dgkA b4042 0.23 -1.2 4,254,782 - dgkA b4042 0.33 +0.8 4,254,817 + dgkA b4042 0.43 -0.5 4,254,824 - dgkA b4042 0.44 +0.1 4,254,831 + dgkA b4042 0.46 +0.6 4,254,833 + dgkA b4042 0.47 -0.6 4,254,870 - dgkA b4042 0.57 -0.2 4,254,912 + dgkA b4042 0.68 +0.4 4,255,118 + -0.0 4,255,916 - dinF b4044 0.11 -1.9
Or see this region's nucleotide sequence