Experiment: 3-methyl-2-butenol 0.31 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sapD and sapC overlap by 1 nucleotides sapC and sapB overlap by 14 nucleotides sapB and sapA overlap by 4 nucleotides
b1291: sapD - predicted antimicrobial peptide transporter subunit (NCBI), at 1,350,660 to 1,351,652
sapD
b1292: sapC - predicted antimicrobial peptide transporter subunit (NCBI), at 1,351,652 to 1,352,542
sapC
b1293: sapB - predicted antimicrobial peptide transporter subunit (NCBI), at 1,352,529 to 1,353,494
sapB
b1294: sapA - predicted antimicrobial peptide transporter subunit (NCBI), at 1,353,491 to 1,355,134
sapA
Position (kb)
1352
1353
1354 Strain fitness (log2 ratio)
-2
-1
0
1 at 1351.739 kb on - strand at 1352.074 kb on - strand, within sapC at 1352.113 kb on + strand, within sapC at 1352.173 kb on + strand, within sapC at 1352.173 kb on + strand, within sapC at 1352.254 kb on + strand, within sapC at 1352.290 kb on - strand, within sapC at 1352.351 kb on - strand, within sapC at 1352.438 kb on + strand, within sapC at 1352.770 kb on - strand, within sapB at 1352.770 kb on - strand, within sapB at 1352.790 kb on + strand, within sapB at 1353.131 kb on + strand, within sapB at 1353.522 kb on + strand at 1353.566 kb on - strand at 1353.747 kb on + strand, within sapA at 1353.747 kb on + strand, within sapA at 1353.825 kb on + strand, within sapA at 1353.825 kb on + strand, within sapA at 1353.841 kb on + strand, within sapA at 1353.841 kb on + strand, within sapA at 1353.844 kb on - strand, within sapA at 1353.890 kb on - strand, within sapA at 1353.890 kb on - strand, within sapA at 1353.912 kb on - strand, within sapA at 1353.987 kb on + strand, within sapA at 1354.118 kb on - strand, within sapA at 1354.136 kb on + strand, within sapA at 1354.136 kb on + strand, within sapA at 1354.136 kb on + strand, within sapA at 1354.136 kb on + strand, within sapA at 1354.320 kb on - strand, within sapA at 1354.330 kb on - strand, within sapA at 1354.427 kb on - strand, within sapA at 1354.486 kb on - strand, within sapA at 1354.486 kb on - strand, within sapA
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-2-butenol 0.31 vol% remove 1,351,739 - -1.1 1,352,074 - sapC b1292 0.47 -0.6 1,352,113 + sapC b1292 0.52 -0.8 1,352,173 + sapC b1292 0.58 -0.8 1,352,173 + sapC b1292 0.58 -1.2 1,352,254 + sapC b1292 0.68 +0.1 1,352,290 - sapC b1292 0.72 -0.1 1,352,351 - sapC b1292 0.78 -1.0 1,352,438 + sapC b1292 0.88 -0.8 1,352,770 - sapB b1293 0.25 -0.5 1,352,770 - sapB b1293 0.25 +0.3 1,352,790 + sapB b1293 0.27 -1.4 1,353,131 + sapB b1293 0.62 -1.6 1,353,522 + -1.5 1,353,566 - +0.1 1,353,747 + sapA b1294 0.16 -0.5 1,353,747 + sapA b1294 0.16 -1.3 1,353,825 + sapA b1294 0.20 -0.6 1,353,825 + sapA b1294 0.20 -1.9 1,353,841 + sapA b1294 0.21 -0.9 1,353,841 + sapA b1294 0.21 +0.2 1,353,844 - sapA b1294 0.21 +1.3 1,353,890 - sapA b1294 0.24 +0.3 1,353,890 - sapA b1294 0.24 +0.8 1,353,912 - sapA b1294 0.26 +0.3 1,353,987 + sapA b1294 0.30 -0.9 1,354,118 - sapA b1294 0.38 +0.2 1,354,136 + sapA b1294 0.39 +0.8 1,354,136 + sapA b1294 0.39 -0.0 1,354,136 + sapA b1294 0.39 +1.2 1,354,136 + sapA b1294 0.39 -0.1 1,354,320 - sapA b1294 0.50 -0.2 1,354,330 - sapA b1294 0.51 +1.0 1,354,427 - sapA b1294 0.57 +1.3 1,354,486 - sapA b1294 0.61 +0.1 1,354,486 - sapA b1294 0.61 +0.1
Or see this region's nucleotide sequence