Strain Fitness in Escherichia coli BW25113 around b2592
Experiment: 3-methyl-2-butenol 0.31 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-2-butenol 0.31 vol% |
---|---|---|---|---|---|
remove | |||||
2,729,412 | - | -1.3 | |||
2,729,705 | - | -0.6 | |||
2,729,753 | + | +0.4 | |||
2,729,753 | + | -0.1 | |||
2,729,761 | - | +0.5 | |||
2,729,900 | + | clpB | b2592 | 0.11 | +0.3 |
2,730,084 | + | clpB | b2592 | 0.18 | +0.1 |
2,730,092 | - | clpB | b2592 | 0.18 | +0.1 |
2,730,173 | + | clpB | b2592 | 0.21 | +0.6 |
2,730,189 | - | clpB | b2592 | 0.22 | +0.6 |
2,730,269 | - | clpB | b2592 | 0.25 | +0.2 |
2,730,269 | - | clpB | b2592 | 0.25 | +1.0 |
2,730,304 | - | clpB | b2592 | 0.26 | -1.1 |
2,730,304 | - | clpB | b2592 | 0.26 | +0.3 |
2,730,346 | + | clpB | b2592 | 0.28 | +0.5 |
2,730,357 | - | clpB | b2592 | 0.29 | +0.2 |
2,730,357 | - | clpB | b2592 | 0.29 | +0.6 |
2,730,392 | + | clpB | b2592 | 0.30 | +0.5 |
2,730,456 | - | clpB | b2592 | 0.32 | +0.9 |
2,730,516 | - | clpB | b2592 | 0.35 | +0.1 |
2,730,565 | + | clpB | b2592 | 0.37 | -0.1 |
2,730,755 | + | clpB | b2592 | 0.44 | -0.7 |
2,730,787 | - | clpB | b2592 | 0.45 | +0.2 |
2,730,798 | + | clpB | b2592 | 0.46 | -0.2 |
2,730,798 | + | clpB | b2592 | 0.46 | -0.9 |
2,730,862 | - | clpB | b2592 | 0.48 | +1.0 |
2,730,901 | - | clpB | b2592 | 0.50 | -1.1 |
2,730,901 | - | clpB | b2592 | 0.50 | +0.3 |
2,730,902 | + | clpB | b2592 | 0.50 | -0.1 |
2,731,039 | + | clpB | b2592 | 0.55 | +0.3 |
2,731,048 | - | clpB | b2592 | 0.55 | -0.6 |
2,731,121 | - | clpB | b2592 | 0.58 | +0.4 |
2,731,121 | - | clpB | b2592 | 0.58 | +1.1 |
2,731,133 | + | clpB | b2592 | 0.59 | +0.5 |
2,731,156 | - | clpB | b2592 | 0.60 | +0.6 |
2,731,267 | - | clpB | b2592 | 0.64 | +0.9 |
2,731,267 | - | clpB | b2592 | 0.64 | +0.2 |
2,731,351 | + | clpB | b2592 | 0.67 | +0.8 |
2,731,448 | - | clpB | b2592 | 0.71 | +0.2 |
2,731,468 | + | clpB | b2592 | 0.72 | -0.0 |
2,731,476 | - | clpB | b2592 | 0.72 | +0.3 |
2,731,476 | - | clpB | b2592 | 0.72 | +0.0 |
2,731,481 | - | clpB | b2592 | 0.72 | -0.0 |
2,731,531 | - | clpB | b2592 | 0.74 | +0.0 |
2,731,575 | - | clpB | b2592 | 0.76 | +0.1 |
2,731,674 | - | clpB | b2592 | 0.80 | +0.5 |
2,731,730 | + | clpB | b2592 | 0.82 | +0.9 |
2,731,736 | - | clpB | b2592 | 0.82 | +0.5 |
2,731,746 | - | clpB | b2592 | 0.83 | +0.1 |
2,731,746 | - | clpB | b2592 | 0.83 | -0.4 |
2,731,857 | - | clpB | b2592 | 0.87 | +0.5 |
2,731,868 | + | clpB | b2592 | 0.87 | +0.3 |
2,731,919 | + | clpB | b2592 | 0.89 | +0.1 |
2,731,927 | - | clpB | b2592 | 0.90 | +0.6 |
2,731,965 | - | -0.6 | |||
2,731,966 | - | +0.4 | |||
2,731,966 | - | +0.3 | |||
2,732,002 | - | -0.1 | |||
2,732,140 | - | +1.0 | |||
2,732,202 | + | ryfD | b4609 | 0.19 | +0.4 |
2,732,205 | - | ryfD | b4609 | 0.21 | -1.2 |
2,732,212 | + | ryfD | b4609 | 0.26 | -0.6 |
2,732,212 | + | ryfD | b4609 | 0.26 | +0.8 |
2,732,251 | + | ryfD | b4609 | 0.53 | +0.7 |
2,732,277 | - | ryfD | b4609 | 0.71 | -1.5 |
2,732,277 | - | ryfD | b4609 | 0.71 | +0.3 |
2,732,323 | + | -0.7 | |||
2,732,323 | + | -0.3 | |||
2,732,456 | - | yfiH | b2593 | 0.18 | -0.7 |
2,732,499 | - | yfiH | b2593 | 0.24 | -0.6 |
2,732,499 | - | yfiH | b2593 | 0.24 | +1.1 |
2,732,502 | - | yfiH | b2593 | 0.24 | -0.0 |
2,732,502 | - | yfiH | b2593 | 0.24 | -0.4 |
2,732,563 | - | yfiH | b2593 | 0.33 | +0.4 |
2,732,563 | - | yfiH | b2593 | 0.33 | -0.1 |
2,732,594 | + | yfiH | b2593 | 0.37 | +0.1 |
2,732,602 | - | yfiH | b2593 | 0.38 | +0.2 |
2,732,648 | + | yfiH | b2593 | 0.44 | +0.1 |
2,732,659 | + | yfiH | b2593 | 0.46 | -0.6 |
2,732,669 | + | yfiH | b2593 | 0.47 | +0.2 |
2,732,748 | + | yfiH | b2593 | 0.58 | -0.6 |
2,732,756 | - | yfiH | b2593 | 0.59 | -0.1 |
2,732,763 | - | yfiH | b2593 | 0.60 | +0.7 |
2,732,763 | - | yfiH | b2593 | 0.60 | -0.3 |
2,732,778 | + | yfiH | b2593 | 0.62 | -0.1 |
2,732,813 | - | yfiH | b2593 | 0.67 | -1.1 |
2,732,813 | - | yfiH | b2593 | 0.67 | +0.6 |
2,732,852 | - | yfiH | b2593 | 0.72 | -0.2 |
2,732,854 | - | yfiH | b2593 | 0.72 | +0.2 |
2,732,926 | + | yfiH | b2593 | 0.82 | +0.4 |
2,732,943 | - | yfiH | b2593 | 0.84 | +0.9 |
2,732,969 | - | yfiH | b2593 | 0.88 | -0.2 |
2,732,969 | - | yfiH | b2593 | 0.88 | +0.4 |
2,732,994 | + | +0.4 | |||
2,733,052 | + | -0.4 | |||
2,733,060 | - | +0.4 | |||
2,733,062 | - | +0.3 | |||
2,733,072 | + | -0.8 | |||
2,733,079 | - | -0.3 | |||
2,733,079 | - | +0.5 |
Or see this region's nucleotide sequence