Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5050 and Psyr_5051 are separated by 267 nucleotides Psyr_5051 and Psyr_5052 are separated by 281 nucleotides
Psyr_5050: Psyr_5050 - transcriptional regulator, LysR family, at 5,990,865 to 5,991,812
_5050
Psyr_5051: Psyr_5051 - Aspartate ammonia-lyase, at 5,992,080 to 5,993,504
_5051
Psyr_5052: Psyr_5052 - Sodium:alanine symporter, at 5,993,786 to 5,995,237
_5052
Position (kb) 5992
5993
5994 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5991.091 kb on + strand, within Psyr_5050 at 5991.092 kb on - strand, within Psyr_5050 at 5991.092 kb on - strand, within Psyr_5050 at 5991.316 kb on + strand, within Psyr_5050 at 5991.316 kb on + strand, within Psyr_5050 at 5991.316 kb on + strand, within Psyr_5050 at 5991.870 kb on - strand at 5991.870 kb on - strand at 5991.870 kb on - strand at 5991.870 kb on - strand at 5991.969 kb on - strand at 5991.969 kb on - strand at 5991.984 kb on - strand at 5992.031 kb on - strand at 5992.150 kb on - strand at 5992.150 kb on - strand at 5992.152 kb on + strand at 5992.153 kb on - strand at 5992.467 kb on + strand, within Psyr_5051 at 5992.467 kb on + strand, within Psyr_5051 at 5992.468 kb on - strand, within Psyr_5051 at 5992.944 kb on - strand, within Psyr_5051 at 5993.194 kb on - strand, within Psyr_5051 at 5993.194 kb on - strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.338 kb on - strand, within Psyr_5051 at 5993.338 kb on - strand, within Psyr_5051 at 5993.338 kb on - strand, within Psyr_5051 at 5993.338 kb on - strand, within Psyr_5051 at 5993.546 kb on - strand at 5993.649 kb on - strand at 5993.674 kb on + strand at 5993.674 kb on + strand at 5993.675 kb on - strand at 5993.723 kb on - strand at 5993.747 kb on + strand at 5993.749 kb on + strand at 5993.750 kb on - strand at 5993.750 kb on - strand at 5993.824 kb on - strand at 5993.824 kb on - strand at 5993.856 kb on - strand at 5994.122 kb on + strand, within Psyr_5052 at 5994.123 kb on - strand, within Psyr_5052 at 5994.170 kb on + strand, within Psyr_5052 at 5994.170 kb on + strand, within Psyr_5052 at 5994.170 kb on + strand, within Psyr_5052 at 5994.170 kb on + strand, within Psyr_5052 at 5994.171 kb on - strand, within Psyr_5052 at 5994.171 kb on - strand, within Psyr_5052 at 5994.219 kb on + strand, within Psyr_5052 at 5994.336 kb on + strand, within Psyr_5052 at 5994.419 kb on + strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.479 kb on - strand, within Psyr_5052 at 5994.479 kb on - strand, within Psyr_5052
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,991,091 + Psyr_5050 0.24 +0.1 5,991,092 - Psyr_5050 0.24 +1.3 5,991,092 - Psyr_5050 0.24 +0.1 5,991,316 + Psyr_5050 0.48 +1.0 5,991,316 + Psyr_5050 0.48 +1.2 5,991,316 + Psyr_5050 0.48 -0.1 5,991,870 - -0.8 5,991,870 - -0.5 5,991,870 - -0.4 5,991,870 - -0.1 5,991,969 - +1.0 5,991,969 - +0.1 5,991,984 - -0.9 5,992,031 - -0.0 5,992,150 - -0.4 5,992,150 - +0.6 5,992,152 + -0.7 5,992,153 - +0.0 5,992,467 + Psyr_5051 0.27 -0.9 5,992,467 + Psyr_5051 0.27 +0.8 5,992,468 - Psyr_5051 0.27 +0.0 5,992,944 - Psyr_5051 0.61 -0.6 5,993,194 - Psyr_5051 0.78 -0.3 5,993,194 - Psyr_5051 0.78 +0.0 5,993,337 + Psyr_5051 0.88 +0.7 5,993,337 + Psyr_5051 0.88 +0.3 5,993,337 + Psyr_5051 0.88 +0.0 5,993,337 + Psyr_5051 0.88 +0.1 5,993,337 + Psyr_5051 0.88 +1.2 5,993,338 - Psyr_5051 0.88 +0.3 5,993,338 - Psyr_5051 0.88 +1.2 5,993,338 - Psyr_5051 0.88 -0.2 5,993,338 - Psyr_5051 0.88 +0.1 5,993,546 - +0.8 5,993,649 - -1.1 5,993,674 + -1.9 5,993,674 + -0.6 5,993,675 - +0.3 5,993,723 - -0.9 5,993,747 + +0.5 5,993,749 + +1.2 5,993,750 - +0.1 5,993,750 - -0.5 5,993,824 - +2.9 5,993,824 - -0.5 5,993,856 - +0.5 5,994,122 + Psyr_5052 0.23 +0.3 5,994,123 - Psyr_5052 0.23 +0.7 5,994,170 + Psyr_5052 0.26 +1.0 5,994,170 + Psyr_5052 0.26 +0.3 5,994,170 + Psyr_5052 0.26 +0.9 5,994,170 + Psyr_5052 0.26 +0.2 5,994,171 - Psyr_5052 0.27 +0.2 5,994,171 - Psyr_5052 0.27 +0.4 5,994,219 + Psyr_5052 0.30 -0.3 5,994,336 + Psyr_5052 0.38 -1.0 5,994,419 + Psyr_5052 0.44 +0.4 5,994,420 - Psyr_5052 0.44 +1.7 5,994,420 - Psyr_5052 0.44 -0.3 5,994,420 - Psyr_5052 0.44 -0.3 5,994,420 - Psyr_5052 0.44 +0.1 5,994,420 - Psyr_5052 0.44 +0.1 5,994,437 + Psyr_5052 0.45 -0.4 5,994,437 + Psyr_5052 0.45 +1.8 5,994,437 + Psyr_5052 0.45 +0.6 5,994,437 + Psyr_5052 0.45 +1.2 5,994,437 + Psyr_5052 0.45 -0.5 5,994,437 + Psyr_5052 0.45 +1.4 5,994,437 + Psyr_5052 0.45 +0.9 5,994,437 + Psyr_5052 0.45 +0.3 5,994,438 - Psyr_5052 0.45 +0.8 5,994,438 - Psyr_5052 0.45 +0.7 5,994,438 - Psyr_5052 0.45 +0.6 5,994,438 - Psyr_5052 0.45 +1.7 5,994,438 - Psyr_5052 0.45 +2.4 5,994,438 - Psyr_5052 0.45 -0.1 5,994,438 - Psyr_5052 0.45 +0.5 5,994,478 + Psyr_5052 0.48 +0.3 5,994,478 + Psyr_5052 0.48 +0.6 5,994,478 + Psyr_5052 0.48 -0.0 5,994,478 + Psyr_5052 0.48 -0.1 5,994,478 + Psyr_5052 0.48 +1.1 5,994,479 - Psyr_5052 0.48 +0.1 5,994,479 - Psyr_5052 0.48 +0.3
Or see this region's nucleotide sequence