Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4572 and Psyr_4573 are separated by 103 nucleotides Psyr_4573 and Psyr_4574 are separated by 121 nucleotides Psyr_4574 and Psyr_4575 are separated by 69 nucleotides
Psyr_4572: Psyr_4572 - Short-chain dehydrogenase/reductase SDR, at 5,436,041 to 5,436,817
_4572
Psyr_4573: Psyr_4573 - Histidine triad (HIT) protein, at 5,436,921 to 5,437,259
_4573
Psyr_4574: Psyr_4574 - conserved hypothetical protein, at 5,437,381 to 5,438,028
_4574
Psyr_4575: Psyr_4575 - adenosylmethionine decarboxylase proenzyme, at 5,438,098 to 5,438,892
_4575
Position (kb) 5437
5438
5439 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5436.442 kb on - strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.674 kb on - strand, within Psyr_4572 at 5436.789 kb on - strand at 5436.803 kb on + strand at 5436.803 kb on + strand at 5436.804 kb on - strand at 5436.853 kb on + strand at 5436.854 kb on - strand at 5436.881 kb on + strand at 5436.935 kb on + strand at 5436.936 kb on - strand at 5436.936 kb on - strand at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.992 kb on - strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.349 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.099 kb on + strand at 5438.100 kb on - strand at 5438.100 kb on - strand at 5438.101 kb on + strand at 5438.102 kb on - strand at 5438.102 kb on - strand at 5438.121 kb on - strand at 5438.210 kb on + strand, within Psyr_4575 at 5438.210 kb on + strand, within Psyr_4575 at 5438.210 kb on + strand, within Psyr_4575 at 5438.210 kb on + strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.267 kb on + strand, within Psyr_4575 at 5438.267 kb on + strand, within Psyr_4575 at 5438.268 kb on - strand, within Psyr_4575 at 5438.318 kb on + strand, within Psyr_4575 at 5438.318 kb on + strand, within Psyr_4575 at 5438.318 kb on + strand, within Psyr_4575 at 5438.318 kb on + strand, within Psyr_4575 at 5438.318 kb on + strand, within Psyr_4575 at 5438.319 kb on - strand, within Psyr_4575 at 5438.319 kb on - strand, within Psyr_4575 at 5438.319 kb on - strand, within Psyr_4575 at 5438.439 kb on - strand, within Psyr_4575 at 5438.439 kb on - strand, within Psyr_4575 at 5438.463 kb on + strand, within Psyr_4575 at 5438.464 kb on - strand, within Psyr_4575 at 5438.487 kb on + strand, within Psyr_4575 at 5438.551 kb on - strand, within Psyr_4575 at 5438.678 kb on + strand, within Psyr_4575 at 5438.678 kb on + strand, within Psyr_4575 at 5438.763 kb on - strand, within Psyr_4575 at 5438.763 kb on - strand, within Psyr_4575 at 5438.777 kb on + strand, within Psyr_4575 at 5438.777 kb on + strand, within Psyr_4575 at 5438.777 kb on + strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.787 kb on - strand, within Psyr_4575 at 5438.787 kb on - strand, within Psyr_4575 at 5438.787 kb on - strand, within Psyr_4575 at 5438.828 kb on + strand at 5438.828 kb on + strand at 5438.829 kb on - strand at 5438.829 kb on - strand at 5438.829 kb on - strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.910 kb on - strand at 5438.971 kb on + strand at 5438.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,436,442 - Psyr_4572 0.52 +0.4 5,436,494 + Psyr_4572 0.58 +0.5 5,436,494 + Psyr_4572 0.58 +0.1 5,436,494 + Psyr_4572 0.58 -0.2 5,436,494 + Psyr_4572 0.58 -2.5 5,436,494 + Psyr_4572 0.58 +1.1 5,436,494 + Psyr_4572 0.58 +0.2 5,436,495 - Psyr_4572 0.58 +0.1 5,436,495 - Psyr_4572 0.58 +1.0 5,436,495 - Psyr_4572 0.58 -0.6 5,436,495 - Psyr_4572 0.58 -0.1 5,436,495 - Psyr_4572 0.58 +0.5 5,436,495 - Psyr_4572 0.58 +1.0 5,436,495 - Psyr_4572 0.58 +0.7 5,436,495 - Psyr_4572 0.58 +1.2 5,436,495 - Psyr_4572 0.58 +0.5 5,436,495 - Psyr_4572 0.58 +1.7 5,436,495 - Psyr_4572 0.58 -0.2 5,436,495 - Psyr_4572 0.58 -0.0 5,436,495 - Psyr_4572 0.58 +0.1 5,436,495 - Psyr_4572 0.58 -1.7 5,436,495 - Psyr_4572 0.58 +0.4 5,436,497 + Psyr_4572 0.59 -0.3 5,436,497 + Psyr_4572 0.59 +0.5 5,436,497 + Psyr_4572 0.59 +0.3 5,436,497 + Psyr_4572 0.59 +0.7 5,436,497 + Psyr_4572 0.59 +0.7 5,436,498 - Psyr_4572 0.59 +0.3 5,436,498 - Psyr_4572 0.59 +0.8 5,436,498 - Psyr_4572 0.59 -0.0 5,436,498 - Psyr_4572 0.59 +0.8 5,436,498 - Psyr_4572 0.59 -0.0 5,436,512 + Psyr_4572 0.61 +0.1 5,436,512 + Psyr_4572 0.61 +0.2 5,436,512 + Psyr_4572 0.61 +0.7 5,436,512 + Psyr_4572 0.61 +0.9 5,436,512 + Psyr_4572 0.61 +0.1 5,436,512 + Psyr_4572 0.61 +0.4 5,436,512 + Psyr_4572 0.61 +0.7 5,436,513 - Psyr_4572 0.61 +0.9 5,436,513 - Psyr_4572 0.61 -0.3 5,436,513 - Psyr_4572 0.61 -2.3 5,436,513 - Psyr_4572 0.61 +2.2 5,436,513 - Psyr_4572 0.61 +0.6 5,436,513 - Psyr_4572 0.61 +0.8 5,436,671 + Psyr_4572 0.81 +0.8 5,436,671 + Psyr_4572 0.81 -2.7 5,436,671 + Psyr_4572 0.81 +0.4 5,436,671 + Psyr_4572 0.81 +0.3 5,436,671 + Psyr_4572 0.81 -1.1 5,436,672 - Psyr_4572 0.81 -0.6 5,436,672 - Psyr_4572 0.81 -0.2 5,436,672 - Psyr_4572 0.81 +0.8 5,436,674 - Psyr_4572 0.81 -0.5 5,436,789 - -0.1 5,436,803 + +1.3 5,436,803 + +0.0 5,436,804 - +0.9 5,436,853 + -0.3 5,436,854 - +0.1 5,436,881 + -1.2 5,436,935 + +1.1 5,436,936 - -0.2 5,436,936 - +0.5 5,436,975 + Psyr_4573 0.16 +0.7 5,436,975 + Psyr_4573 0.16 +0.1 5,436,975 + Psyr_4573 0.16 -0.0 5,436,975 + Psyr_4573 0.16 +0.7 5,436,976 - Psyr_4573 0.16 -0.3 5,436,976 - Psyr_4573 0.16 -0.3 5,436,976 - Psyr_4573 0.16 -0.9 5,436,976 - Psyr_4573 0.16 +0.2 5,436,976 - Psyr_4573 0.16 +0.4 5,436,976 - Psyr_4573 0.16 +0.0 5,436,976 - Psyr_4573 0.16 +1.5 5,436,976 - Psyr_4573 0.16 -0.6 5,436,976 - Psyr_4573 0.16 -0.1 5,436,976 - Psyr_4573 0.16 +0.2 5,436,992 - Psyr_4573 0.21 -0.9 5,437,106 + Psyr_4573 0.55 +0.4 5,437,106 + Psyr_4573 0.55 +0.3 5,437,106 + Psyr_4573 0.55 -0.6 5,437,106 + Psyr_4573 0.55 +3.5 5,437,106 + Psyr_4573 0.55 -0.1 5,437,107 - Psyr_4573 0.55 -0.6 5,437,107 - Psyr_4573 0.55 -0.6 5,437,107 - Psyr_4573 0.55 -0.1 5,437,107 - Psyr_4573 0.55 +0.3 5,437,107 - Psyr_4573 0.55 +0.4 5,437,107 - Psyr_4573 0.55 +0.2 5,437,107 - Psyr_4573 0.55 -0.3 5,437,107 - Psyr_4573 0.55 +0.3 5,437,107 - Psyr_4573 0.55 -0.3 5,437,107 - Psyr_4573 0.55 -0.3 5,437,222 + Psyr_4573 0.89 -0.1 5,437,222 + Psyr_4573 0.89 -0.8 5,437,222 + Psyr_4573 0.89 +1.3 5,437,222 + Psyr_4573 0.89 -0.9 5,437,222 + Psyr_4573 0.89 +0.1 5,437,222 + Psyr_4573 0.89 -0.2 5,437,223 - Psyr_4573 0.89 +0.4 5,437,223 - Psyr_4573 0.89 -0.2 5,437,223 - Psyr_4573 0.89 -0.7 5,437,223 - Psyr_4573 0.89 +0.5 5,437,223 - Psyr_4573 0.89 +1.9 5,437,223 - Psyr_4573 0.89 +0.7 5,437,223 - Psyr_4573 0.89 +0.5 5,437,223 - Psyr_4573 0.89 +0.9 5,437,223 - Psyr_4573 0.89 -1.3 5,437,223 - Psyr_4573 0.89 +0.7 5,437,223 - Psyr_4573 0.89 -0.5 5,437,223 - Psyr_4573 0.89 +0.7 5,437,223 - Psyr_4573 0.89 -0.2 5,437,349 + +0.2 5,438,036 + -0.4 5,438,036 + +0.8 5,438,036 + +0.3 5,438,036 + -0.6 5,438,036 + +1.4 5,438,036 + -1.0 5,438,036 + -0.5 5,438,036 + +1.2 5,438,037 - +0.7 5,438,037 - -1.9 5,438,037 - -0.1 5,438,037 - -0.2 5,438,037 - +0.7 5,438,037 - -0.3 5,438,037 - +2.1 5,438,037 - +0.2 5,438,037 - +0.1 5,438,037 - +0.5 5,438,037 - -0.1 5,438,038 + +0.8 5,438,038 + -1.2 5,438,038 + +0.1 5,438,038 + +0.2 5,438,038 + +0.7 5,438,038 + +0.7 5,438,038 + -0.1 5,438,038 + +0.2 5,438,038 + +1.7 5,438,038 + +0.4 5,438,038 + -0.3 5,438,038 + +0.0 5,438,039 - -0.7 5,438,039 - -0.2 5,438,039 - -0.6 5,438,039 - +0.4 5,438,039 - +0.5 5,438,039 - +0.1 5,438,039 - -2.5 5,438,039 - +1.1 5,438,099 + +0.5 5,438,100 - +1.6 5,438,100 - -1.2 5,438,101 + -1.2 5,438,102 - +0.8 5,438,102 - +0.7 5,438,121 - -0.5 5,438,210 + Psyr_4575 0.14 +0.8 5,438,210 + Psyr_4575 0.14 -0.9 5,438,210 + Psyr_4575 0.14 +1.1 5,438,210 + Psyr_4575 0.14 -0.5 5,438,211 - Psyr_4575 0.14 +0.1 5,438,211 - Psyr_4575 0.14 +3.1 5,438,211 - Psyr_4575 0.14 +0.6 5,438,211 - Psyr_4575 0.14 +0.0 5,438,211 - Psyr_4575 0.14 +1.1 5,438,267 + Psyr_4575 0.21 +0.1 5,438,267 + Psyr_4575 0.21 +0.4 5,438,268 - Psyr_4575 0.21 -0.7 5,438,318 + Psyr_4575 0.28 +0.2 5,438,318 + Psyr_4575 0.28 -0.1 5,438,318 + Psyr_4575 0.28 +0.1 5,438,318 + Psyr_4575 0.28 +0.1 5,438,318 + Psyr_4575 0.28 +1.3 5,438,319 - Psyr_4575 0.28 +1.7 5,438,319 - Psyr_4575 0.28 +1.1 5,438,319 - Psyr_4575 0.28 +0.9 5,438,439 - Psyr_4575 0.43 +1.4 5,438,439 - Psyr_4575 0.43 +0.4 5,438,463 + Psyr_4575 0.46 -0.1 5,438,464 - Psyr_4575 0.46 +0.4 5,438,487 + Psyr_4575 0.49 -1.4 5,438,551 - Psyr_4575 0.57 -0.0 5,438,678 + Psyr_4575 0.73 +0.2 5,438,678 + Psyr_4575 0.73 +2.7 5,438,763 - Psyr_4575 0.84 +0.1 5,438,763 - Psyr_4575 0.84 +0.0 5,438,777 + Psyr_4575 0.85 +0.2 5,438,777 + Psyr_4575 0.85 +0.5 5,438,777 + Psyr_4575 0.85 +0.6 5,438,778 - Psyr_4575 0.86 -0.2 5,438,778 - Psyr_4575 0.86 -0.5 5,438,778 - Psyr_4575 0.86 +1.2 5,438,778 - Psyr_4575 0.86 -2.1 5,438,778 - Psyr_4575 0.86 -1.3 5,438,786 + Psyr_4575 0.87 +0.4 5,438,786 + Psyr_4575 0.87 -0.5 5,438,786 + Psyr_4575 0.87 +0.2 5,438,786 + Psyr_4575 0.87 -0.6 5,438,786 + Psyr_4575 0.87 -0.7 5,438,787 - Psyr_4575 0.87 +0.7 5,438,787 - Psyr_4575 0.87 +0.2 5,438,787 - Psyr_4575 0.87 -1.1 5,438,828 + +0.2 5,438,828 + -1.6 5,438,829 - -0.9 5,438,829 - +0.3 5,438,829 - -0.2 5,438,907 + +0.3 5,438,907 + +2.2 5,438,907 + +0.3 5,438,907 + -0.0 5,438,907 + -0.0 5,438,907 + -0.9 5,438,907 + -0.7 5,438,907 + +0.6 5,438,907 + -0.9 5,438,908 - -0.6 5,438,908 - +0.0 5,438,908 - +2.1 5,438,908 - +0.7 5,438,908 - +0.5 5,438,908 - +0.9 5,438,910 - +0.1 5,438,971 + -0.8 5,438,972 - +0.6
Or see this region's nucleotide sequence