Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4505 and Psyr_4506 are separated by 6 nucleotides Psyr_4506 and Psyr_4507 overlap by 4 nucleotides Psyr_4507 and Psyr_4508 overlap by 1 nucleotides
Psyr_4505: Psyr_4505 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 5,369,234 to 5,370,340
_4505
Psyr_4506: Psyr_4506 - Glycerophosphodiester phosphodiesterase, at 5,370,347 to 5,371,108
_4506
Psyr_4507: Psyr_4507 - Inositol monophosphatase, at 5,371,105 to 5,371,848
_4507
Psyr_4508: Psyr_4508 - Endo-1,4-beta-xylanase, at 5,371,848 to 5,372,960
_4508
Position (kb) 5370
5371
5372 Strain fitness (log2 ratio) -1
0
1
2 at 5369.511 kb on - strand, within Psyr_4505 at 5369.511 kb on - strand, within Psyr_4505 at 5369.637 kb on + strand, within Psyr_4505 at 5369.637 kb on + strand, within Psyr_4505 at 5369.638 kb on - strand, within Psyr_4505 at 5369.825 kb on + strand, within Psyr_4505 at 5369.825 kb on + strand, within Psyr_4505 at 5369.825 kb on + strand, within Psyr_4505 at 5369.825 kb on + strand, within Psyr_4505 at 5369.825 kb on + strand, within Psyr_4505 at 5369.825 kb on + strand, within Psyr_4505 at 5369.825 kb on + strand, within Psyr_4505 at 5369.825 kb on + strand, within Psyr_4505 at 5369.826 kb on - strand, within Psyr_4505 at 5369.826 kb on - strand, within Psyr_4505 at 5369.924 kb on + strand, within Psyr_4505 at 5369.925 kb on - strand, within Psyr_4505 at 5369.925 kb on - strand, within Psyr_4505 at 5369.925 kb on - strand, within Psyr_4505 at 5370.180 kb on - strand, within Psyr_4505 at 5370.180 kb on - strand, within Psyr_4505 at 5370.407 kb on + strand at 5370.407 kb on + strand at 5370.407 kb on + strand at 5370.407 kb on + strand at 5370.407 kb on + strand at 5370.408 kb on - strand at 5370.408 kb on - strand at 5370.846 kb on + strand, within Psyr_4506 at 5370.846 kb on + strand, within Psyr_4506 at 5370.846 kb on + strand, within Psyr_4506 at 5370.846 kb on + strand, within Psyr_4506 at 5370.847 kb on - strand, within Psyr_4506 at 5370.847 kb on - strand, within Psyr_4506 at 5370.856 kb on + strand, within Psyr_4506 at 5370.905 kb on + strand, within Psyr_4506 at 5370.918 kb on + strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.937 kb on + strand, within Psyr_4506 at 5370.938 kb on - strand, within Psyr_4506 at 5370.938 kb on - strand, within Psyr_4506 at 5371.033 kb on - strand at 5371.033 kb on - strand at 5371.033 kb on - strand at 5371.139 kb on + strand at 5371.140 kb on - strand at 5371.140 kb on - strand at 5371.140 kb on - strand at 5371.291 kb on - strand, within Psyr_4507 at 5371.291 kb on - strand, within Psyr_4507 at 5371.291 kb on - strand, within Psyr_4507 at 5371.291 kb on - strand, within Psyr_4507 at 5371.370 kb on - strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.462 kb on + strand, within Psyr_4507 at 5371.465 kb on - strand, within Psyr_4507 at 5371.694 kb on - strand, within Psyr_4507 at 5371.812 kb on - strand at 5371.860 kb on - strand at 5371.860 kb on - strand at 5371.981 kb on + strand, within Psyr_4508 at 5372.066 kb on - strand, within Psyr_4508
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,369,511 - Psyr_4505 0.25 +1.7 5,369,511 - Psyr_4505 0.25 -0.4 5,369,637 + Psyr_4505 0.36 +0.4 5,369,637 + Psyr_4505 0.36 +0.0 5,369,638 - Psyr_4505 0.36 +1.0 5,369,825 + Psyr_4505 0.53 -0.2 5,369,825 + Psyr_4505 0.53 -0.9 5,369,825 + Psyr_4505 0.53 -0.2 5,369,825 + Psyr_4505 0.53 -1.1 5,369,825 + Psyr_4505 0.53 +0.5 5,369,825 + Psyr_4505 0.53 +0.9 5,369,825 + Psyr_4505 0.53 +1.5 5,369,825 + Psyr_4505 0.53 -0.1 5,369,826 - Psyr_4505 0.53 +0.3 5,369,826 - Psyr_4505 0.53 +1.5 5,369,924 + Psyr_4505 0.62 +0.1 5,369,925 - Psyr_4505 0.62 -0.1 5,369,925 - Psyr_4505 0.62 +0.4 5,369,925 - Psyr_4505 0.62 -0.9 5,370,180 - Psyr_4505 0.85 +1.2 5,370,180 - Psyr_4505 0.85 +0.5 5,370,407 + +0.7 5,370,407 + -0.5 5,370,407 + -0.9 5,370,407 + -0.3 5,370,407 + +0.7 5,370,408 - -0.3 5,370,408 - +0.8 5,370,846 + Psyr_4506 0.65 +0.5 5,370,846 + Psyr_4506 0.65 +0.5 5,370,846 + Psyr_4506 0.65 +0.5 5,370,846 + Psyr_4506 0.65 +0.3 5,370,847 - Psyr_4506 0.66 +0.7 5,370,847 - Psyr_4506 0.66 +0.5 5,370,856 + Psyr_4506 0.67 -0.1 5,370,905 + Psyr_4506 0.73 +0.1 5,370,918 + Psyr_4506 0.75 -0.3 5,370,919 - Psyr_4506 0.75 -0.6 5,370,919 - Psyr_4506 0.75 +2.4 5,370,919 - Psyr_4506 0.75 +0.1 5,370,927 + Psyr_4506 0.76 +0.8 5,370,927 + Psyr_4506 0.76 +0.7 5,370,927 + Psyr_4506 0.76 +1.3 5,370,928 - Psyr_4506 0.76 +0.8 5,370,928 - Psyr_4506 0.76 -0.4 5,370,928 - Psyr_4506 0.76 +0.7 5,370,937 + Psyr_4506 0.77 -0.0 5,370,938 - Psyr_4506 0.78 +0.7 5,370,938 - Psyr_4506 0.78 +0.1 5,371,033 - +1.4 5,371,033 - -0.1 5,371,033 - +0.7 5,371,139 + +0.7 5,371,140 - -0.1 5,371,140 - +0.7 5,371,140 - -0.0 5,371,291 - Psyr_4507 0.25 +0.8 5,371,291 - Psyr_4507 0.25 +0.1 5,371,291 - Psyr_4507 0.25 +0.1 5,371,291 - Psyr_4507 0.25 +0.0 5,371,370 - Psyr_4507 0.36 +1.1 5,371,408 + Psyr_4507 0.41 +0.2 5,371,408 + Psyr_4507 0.41 +1.1 5,371,408 + Psyr_4507 0.41 -0.2 5,371,408 + Psyr_4507 0.41 -0.3 5,371,408 + Psyr_4507 0.41 -0.3 5,371,408 + Psyr_4507 0.41 +1.2 5,371,409 - Psyr_4507 0.41 +0.7 5,371,409 - Psyr_4507 0.41 +0.7 5,371,409 - Psyr_4507 0.41 -0.3 5,371,409 - Psyr_4507 0.41 -0.1 5,371,409 - Psyr_4507 0.41 -0.4 5,371,409 - Psyr_4507 0.41 +0.4 5,371,409 - Psyr_4507 0.41 +1.6 5,371,409 - Psyr_4507 0.41 +0.8 5,371,409 - Psyr_4507 0.41 -0.0 5,371,409 - Psyr_4507 0.41 -0.1 5,371,409 - Psyr_4507 0.41 +1.1 5,371,462 + Psyr_4507 0.48 +1.7 5,371,465 - Psyr_4507 0.48 +0.1 5,371,694 - Psyr_4507 0.79 +0.2 5,371,812 - +1.0 5,371,860 - +0.7 5,371,860 - -0.7 5,371,981 + Psyr_4508 0.12 -0.6 5,372,066 - Psyr_4508 0.20 -0.7
Or see this region's nucleotide sequence