Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3617 and Psyr_3618 are separated by 102 nucleotides Psyr_3618 and Psyr_3619 are separated by 90 nucleotides Psyr_3619 and Psyr_3620 are separated by 69 nucleotides Psyr_3620 and Psyr_3621 are separated by 135 nucleotides
Psyr_3617: Psyr_3617 - Thiopurine S-methyltransferase, at 4,301,417 to 4,302,079
_3617
Psyr_3618: Psyr_3618 - Catalytic LigB subunit of aromatic ring-opening dioxygenase, at 4,302,182 to 4,302,949
_3618
Psyr_3619: Psyr_3619 - Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal, at 4,303,040 to 4,304,713
_3619
Psyr_3620: Psyr_3620 - hypothetical protein, at 4,304,783 to 4,305,031
_3620
Psyr_3621: Psyr_3621 - conserved hypothetical protein, at 4,305,167 to 4,305,928
_3621
Position (kb) 4303
4304
4305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4302.120 kb on - strand at 4302.120 kb on - strand at 4302.151 kb on + strand at 4302.152 kb on - strand at 4302.167 kb on - strand at 4302.179 kb on + strand at 4302.179 kb on + strand at 4302.179 kb on + strand at 4302.179 kb on + strand at 4302.180 kb on - strand at 4302.180 kb on - strand at 4302.180 kb on - strand at 4302.180 kb on - strand at 4302.180 kb on - strand at 4302.199 kb on + strand at 4302.199 kb on + strand at 4302.199 kb on + strand at 4302.200 kb on - strand at 4302.645 kb on + strand, within Psyr_3618 at 4302.646 kb on - strand, within Psyr_3618 at 4302.677 kb on - strand, within Psyr_3618 at 4302.858 kb on - strand, within Psyr_3618 at 4302.931 kb on + strand at 4302.931 kb on + strand at 4302.931 kb on + strand at 4302.932 kb on - strand at 4302.932 kb on - strand at 4302.935 kb on + strand at 4303.238 kb on - strand, within Psyr_3619 at 4303.429 kb on + strand, within Psyr_3619 at 4304.846 kb on - strand, within Psyr_3620 at 4304.895 kb on - strand, within Psyr_3620 at 4304.931 kb on - strand, within Psyr_3620 at 4304.931 kb on - strand, within Psyr_3620 at 4304.942 kb on - strand, within Psyr_3620 at 4305.077 kb on + strand at 4305.164 kb on + strand at 4305.164 kb on + strand at 4305.164 kb on + strand at 4305.165 kb on - strand at 4305.330 kb on + strand, within Psyr_3621 at 4305.331 kb on - strand, within Psyr_3621 at 4305.492 kb on + strand, within Psyr_3621 at 4305.492 kb on + strand, within Psyr_3621 at 4305.493 kb on - strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 4,302,120 - -0.8 4,302,120 - +0.5 4,302,151 + -1.3 4,302,152 - -0.1 4,302,167 - -0.1 4,302,179 + -0.9 4,302,179 + -0.7 4,302,179 + +0.2 4,302,179 + +0.1 4,302,180 - -0.8 4,302,180 - -0.3 4,302,180 - -0.8 4,302,180 - +1.5 4,302,180 - -0.5 4,302,199 + -0.5 4,302,199 + +0.5 4,302,199 + +0.2 4,302,200 - +3.5 4,302,645 + Psyr_3618 0.60 +1.5 4,302,646 - Psyr_3618 0.60 +0.0 4,302,677 - Psyr_3618 0.64 +0.4 4,302,858 - Psyr_3618 0.88 -0.5 4,302,931 + +0.4 4,302,931 + +1.1 4,302,931 + +0.4 4,302,932 - -0.1 4,302,932 - -0.6 4,302,935 + +0.5 4,303,238 - Psyr_3619 0.12 -0.1 4,303,429 + Psyr_3619 0.23 -2.9 4,304,846 - Psyr_3620 0.25 -1.3 4,304,895 - Psyr_3620 0.45 +0.5 4,304,931 - Psyr_3620 0.59 +0.8 4,304,931 - Psyr_3620 0.59 -0.3 4,304,942 - Psyr_3620 0.64 +2.1 4,305,077 + +0.9 4,305,164 + +1.5 4,305,164 + +0.7 4,305,164 + -0.1 4,305,165 - +0.0 4,305,330 + Psyr_3621 0.21 -1.0 4,305,331 - Psyr_3621 0.22 +0.5 4,305,492 + Psyr_3621 0.43 -0.0 4,305,492 + Psyr_3621 0.43 +0.1 4,305,493 - Psyr_3621 0.43 +0.2 4,305,564 + Psyr_3621 0.52 +0.2 4,305,564 + Psyr_3621 0.52 +1.8 4,305,564 + Psyr_3621 0.52 +0.8 4,305,564 + Psyr_3621 0.52 +0.1 4,305,564 + Psyr_3621 0.52 -0.0 4,305,564 + Psyr_3621 0.52 -0.3 4,305,564 + Psyr_3621 0.52 -0.5 4,305,564 + Psyr_3621 0.52 -0.2 4,305,565 - Psyr_3621 0.52 +0.4 4,305,565 - Psyr_3621 0.52 -0.1 4,305,565 - Psyr_3621 0.52 -0.5 4,305,565 - Psyr_3621 0.52 +0.1 4,305,565 - Psyr_3621 0.52 -0.4 4,305,565 - Psyr_3621 0.52 -0.7 4,305,565 - Psyr_3621 0.52 +0.2 4,305,565 - Psyr_3621 0.52 +0.7 4,305,565 - Psyr_3621 0.52 +0.7 4,305,565 - Psyr_3621 0.52 -1.2 4,305,565 - Psyr_3621 0.52 -1.1 4,305,565 - Psyr_3621 0.52 -0.1 4,305,565 - Psyr_3621 0.52 +0.1 4,305,565 - Psyr_3621 0.52 +0.0 4,305,565 - Psyr_3621 0.52 +0.3 4,305,565 - Psyr_3621 0.52 +0.2
Or see this region's nucleotide sequence