Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3221

Experiment: KB with Rifampicin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rifampicin 0.1 mg/ml
3,857,472	-		Psyr_3220	0.74	-0.2
3,857,765	-				+1.4
3,857,765	-				+0.5
3,857,765	-				+0.2
3,857,951	+				-0.6
3,857,956	-				+0.8
3,857,973	-				+0.6
3,857,985	+				-2.9
3,858,026	-				-1.3
3,858,084	+				-0.4
3,858,086	+				-0.6
3,858,086	+				-0.8
3,858,086	+				+0.1
3,858,086	+				-0.2
3,858,086	+				-0.3
3,858,086	+				-1.6
3,858,086	+				-0.1
3,858,086	+				-0.7
3,858,087	-				+0.1
3,858,087	-				-0.3
3,858,087	-				+0.0
3,858,087	-				-1.5
3,858,087	-				+1.7
3,858,088	+				+0.1
3,858,088	+				+0.6
3,858,088	+				+1.7
3,858,088	+				-1.5
3,858,089	-				-1.4
3,858,089	-				+1.5
3,858,089	-				+0.1
3,858,089	-				+0.6
3,858,089	-				+1.1
3,858,089	-				-0.1
3,858,089	-				-0.4
3,858,089	-				-1.2
3,858,114	+				-0.4
3,858,115	-				-1.5
3,858,188	+				-0.3
3,858,188	+				+0.6
3,858,385	+				+1.4
3,858,385	+				+2.9
3,858,386	-				+0.3
3,858,386	-				-0.8
3,858,474	+				+0.4
3,858,474	+				+1.1
3,858,475	-				-0.9
3,858,475	-				-0.1
3,858,475	-				+1.2
3,858,475	-				+0.4
3,858,519	+				+1.9
3,858,519	+				+2.1
3,858,519	+				-0.5
3,858,519	+				-1.2
3,858,520	-				+0.0
3,858,520	-				+2.4
3,858,585	+		Psyr_3221	0.12	+1.0
3,858,586	-		Psyr_3221	0.12	+1.1
3,858,606	-		Psyr_3221	0.14	-0.3
3,858,904	-		Psyr_3221	0.40	-0.2
3,859,213	-		Psyr_3221	0.68	+2.1
3,859,213	-		Psyr_3221	0.68	-1.4
3,859,213	-		Psyr_3221	0.68	-1.9
3,859,213	-		Psyr_3221	0.68	-1.6
3,859,281	+		Psyr_3221	0.74	-0.1
3,859,281	+		Psyr_3221	0.74	+0.2
3,859,282	-		Psyr_3221	0.74	+1.4
3,859,282	-		Psyr_3221	0.74	+2.4
3,859,282	-		Psyr_3221	0.74	+0.4
3,859,282	-		Psyr_3221	0.74	-1.6
3,859,366	-		Psyr_3221	0.81	+0.4
3,859,372	-		Psyr_3221	0.82	+1.2
3,859,637	+				+0.6
3,859,637	+				-0.9
3,859,637	+				-1.2
3,859,637	+				-0.3
3,859,637	+				-0.1
3,859,637	+				-0.6
3,859,638	-				+0.8
3,859,638	-				-0.7
3,859,638	-				-0.1
3,859,638	-				+0.5
3,859,638	-				-0.2
3,859,638	-				-0.2
3,859,820	+		Psyr_3222	0.16	+0.7
3,859,821	-		Psyr_3222	0.16	-1.1
3,859,942	-		Psyr_3222	0.24	+0.5
3,859,942	-		Psyr_3222	0.24	+0.7
3,860,003	+		Psyr_3222	0.28	+0.8
3,860,016	-		Psyr_3222	0.29	-0.4
3,860,016	-		Psyr_3222	0.29	+0.8
3,860,558	+		Psyr_3222	0.65	-0.2
3,860,559	-		Psyr_3222	0.65	+1.4