Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1823

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1822 and Psyr_1823 are separated by 5 nucleotidesPsyr_1823 and Psyr_1824 are separated by 93 nucleotidesPsyr_1824 and Psyr_1825 are separated by 100 nucleotides Psyr_1822: Psyr_1822 - MscS Mechanosensitive ion channel, at 2,102,041 to 2,103,165 _1822 Psyr_1823: Psyr_1823 - Twin-arginine translocation pathway signal, at 2,103,171 to 2,104,856 _1823 Psyr_1824: Psyr_1824 - amino acid ABC transporter substrate-binding protein, PAAT family, at 2,104,950 to 2,105,744 _1824 Psyr_1825: Psyr_1825 - DNA polymerase III, tau subunit, at 2,105,845 to 2,108,055 _1825 Position (kb) 2103 2104 2105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2102.218 kb on + strand, within Psyr_1822at 2102.218 kb on + strand, within Psyr_1822at 2102.218 kb on + strand, within Psyr_1822at 2102.219 kb on - strand, within Psyr_1822at 2102.219 kb on - strand, within Psyr_1822at 2102.250 kb on + strand, within Psyr_1822at 2102.250 kb on + strand, within Psyr_1822at 2102.250 kb on + strand, within Psyr_1822at 2102.251 kb on - strand, within Psyr_1822at 2102.253 kb on + strand, within Psyr_1822at 2102.253 kb on + strand, within Psyr_1822at 2102.253 kb on + strand, within Psyr_1822at 2102.253 kb on + strand, within Psyr_1822at 2102.253 kb on + strand, within Psyr_1822at 2102.253 kb on + strand, within Psyr_1822at 2102.253 kb on + strand, within Psyr_1822at 2102.254 kb on - strand, within Psyr_1822at 2102.254 kb on - strand, within Psyr_1822at 2102.408 kb on - strand, within Psyr_1822at 2102.791 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.840 kb on - strand, within Psyr_1822at 2102.840 kb on - strand, within Psyr_1822at 2102.840 kb on - strand, within Psyr_1822at 2102.840 kb on - strand, within Psyr_1822at 2102.840 kb on - strand, within Psyr_1822at 2102.995 kb on + strand, within Psyr_1822at 2102.995 kb on + strand, within Psyr_1822at 2102.995 kb on + strand, within Psyr_1822at 2102.996 kb on - strand, within Psyr_1822at 2102.996 kb on - strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.006 kb on + strand, within Psyr_1822at 2103.006 kb on + strand, within Psyr_1822at 2103.094 kb on + strandat 2103.094 kb on + strandat 2103.095 kb on - strandat 2103.118 kb on - strandat 2103.577 kb on + strand, within Psyr_1823at 2103.577 kb on + strand, within Psyr_1823at 2103.578 kb on - strand, within Psyr_1823at 2103.578 kb on - strand, within Psyr_1823at 2103.712 kb on + strand, within Psyr_1823at 2103.712 kb on + strand, within Psyr_1823at 2103.713 kb on - strand, within Psyr_1823at 2103.967 kb on + strand, within Psyr_1823at 2103.967 kb on + strand, within Psyr_1823at 2103.968 kb on - strand, within Psyr_1823at 2103.968 kb on - strand, within Psyr_1823at 2104.258 kb on + strand, within Psyr_1823at 2104.259 kb on - strand, within Psyr_1823at 2104.259 kb on - strand, within Psyr_1823at 2104.259 kb on - strand, within Psyr_1823at 2104.343 kb on - strand, within Psyr_1823at 2104.558 kb on + strand, within Psyr_1823at 2104.558 kb on + strand, within Psyr_1823at 2104.643 kb on - strand, within Psyr_1823at 2104.753 kb on + strandat 2104.754 kb on - strandat 2104.754 kb on - strandat 2104.760 kb on + strandat 2104.907 kb on + strandat 2104.919 kb on - strandat 2104.919 kb on - strandat 2104.972 kb on + strandat 2104.973 kb on - strandat 2105.173 kb on + strand, within Psyr_1824at 2105.173 kb on + strand, within Psyr_1824at 2105.173 kb on + strand, within Psyr_1824at 2105.174 kb on - strand, within Psyr_1824at 2105.174 kb on - strand, within Psyr_1824at 2105.174 kb on - strand, within Psyr_1824at 2105.374 kb on + strand, within Psyr_1824at 2105.375 kb on - strand, within Psyr_1824at 2105.437 kb on + strand, within Psyr_1824at 2105.437 kb on + strand, within Psyr_1824at 2105.437 kb on + strand, within Psyr_1824at 2105.438 kb on - strand, within Psyr_1824at 2105.671 kb on - strandat 2105.671 kb on - strandat 2105.671 kb on - strandat 2105.671 kb on - strandat 2105.765 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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2,102,218 + Psyr_1822 0.16 -2.1
2,102,218 + Psyr_1822 0.16 -0.1
2,102,218 + Psyr_1822 0.16 -1.3
2,102,219 - Psyr_1822 0.16 -0.2
2,102,219 - Psyr_1822 0.16 +0.2
2,102,250 + Psyr_1822 0.19 +0.6
2,102,250 + Psyr_1822 0.19 -0.7
2,102,250 + Psyr_1822 0.19 +0.9
2,102,251 - Psyr_1822 0.19 -0.1
2,102,253 + Psyr_1822 0.19 -0.4
2,102,253 + Psyr_1822 0.19 +0.8
2,102,253 + Psyr_1822 0.19 +1.3
2,102,253 + Psyr_1822 0.19 +1.0
2,102,253 + Psyr_1822 0.19 -0.4
2,102,253 + Psyr_1822 0.19 -0.8
2,102,253 + Psyr_1822 0.19 +0.2
2,102,254 - Psyr_1822 0.19 -0.0
2,102,254 - Psyr_1822 0.19 +0.5
2,102,408 - Psyr_1822 0.33 -0.4
2,102,791 + Psyr_1822 0.67 +0.1
2,102,839 + Psyr_1822 0.71 -0.4
2,102,839 + Psyr_1822 0.71 +0.1
2,102,839 + Psyr_1822 0.71 +1.1
2,102,839 + Psyr_1822 0.71 +0.9
2,102,839 + Psyr_1822 0.71 -0.0
2,102,840 - Psyr_1822 0.71 +0.1
2,102,840 - Psyr_1822 0.71 +1.6
2,102,840 - Psyr_1822 0.71 +0.9
2,102,840 - Psyr_1822 0.71 -1.8
2,102,840 - Psyr_1822 0.71 +1.6
2,102,995 + Psyr_1822 0.85 +1.3
2,102,995 + Psyr_1822 0.85 +1.3
2,102,995 + Psyr_1822 0.85 +0.3
2,102,996 - Psyr_1822 0.85 -0.3
2,102,996 - Psyr_1822 0.85 +1.1
2,103,004 + Psyr_1822 0.86 -0.7
2,103,004 + Psyr_1822 0.86 +1.2
2,103,004 + Psyr_1822 0.86 -2.5
2,103,004 + Psyr_1822 0.86 +0.3
2,103,005 - Psyr_1822 0.86 -0.7
2,103,005 - Psyr_1822 0.86 +2.4
2,103,005 - Psyr_1822 0.86 -0.0
2,103,005 - Psyr_1822 0.86 -1.4
2,103,005 - Psyr_1822 0.86 -0.6
2,103,006 + Psyr_1822 0.86 -0.6
2,103,006 + Psyr_1822 0.86 -3.0
2,103,094 + +0.6
2,103,094 + -0.6
2,103,095 - +0.8
2,103,118 - -0.2
2,103,577 + Psyr_1823 0.24 +0.6
2,103,577 + Psyr_1823 0.24 -0.2
2,103,578 - Psyr_1823 0.24 -0.2
2,103,578 - Psyr_1823 0.24 +0.4
2,103,712 + Psyr_1823 0.32 -1.7
2,103,712 + Psyr_1823 0.32 +0.9
2,103,713 - Psyr_1823 0.32 +1.1
2,103,967 + Psyr_1823 0.47 +0.7
2,103,967 + Psyr_1823 0.47 +0.3
2,103,968 - Psyr_1823 0.47 +0.0
2,103,968 - Psyr_1823 0.47 +1.3
2,104,258 + Psyr_1823 0.64 +0.6
2,104,259 - Psyr_1823 0.65 +0.6
2,104,259 - Psyr_1823 0.65 -0.1
2,104,259 - Psyr_1823 0.65 -1.4
2,104,343 - Psyr_1823 0.70 -1.8
2,104,558 + Psyr_1823 0.82 +0.1
2,104,558 + Psyr_1823 0.82 +0.6
2,104,643 - Psyr_1823 0.87 +1.0
2,104,753 + -0.4
2,104,754 - -0.8
2,104,754 - -2.4
2,104,760 + +0.2
2,104,907 + +0.1
2,104,919 - +1.0
2,104,919 - +0.8
2,104,972 + -0.4
2,104,973 - +0.1
2,105,173 + Psyr_1824 0.28 +1.9
2,105,173 + Psyr_1824 0.28 -1.0
2,105,173 + Psyr_1824 0.28 +0.6
2,105,174 - Psyr_1824 0.28 -0.8
2,105,174 - Psyr_1824 0.28 -1.1
2,105,174 - Psyr_1824 0.28 -0.8
2,105,374 + Psyr_1824 0.53 -1.0
2,105,375 - Psyr_1824 0.53 -0.0
2,105,437 + Psyr_1824 0.61 +0.2
2,105,437 + Psyr_1824 0.61 -0.1
2,105,437 + Psyr_1824 0.61 -0.7
2,105,438 - Psyr_1824 0.61 +0.9
2,105,671 - +1.0
2,105,671 - +0.6
2,105,671 - -1.2
2,105,671 - -0.7
2,105,765 - -2.3

Or see this region's nucleotide sequence