Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1548 and Psyr_1549 are separated by 18 nucleotides Psyr_1549 and Psyr_1550 are separated by 0 nucleotides Psyr_1550 and Psyr_1551 are separated by 28 nucleotides
Psyr_1548: Psyr_1548 - dihydrodipicolinate synthase, at 1,741,344 to 1,742,222
_1548
Psyr_1549: Psyr_1549 - lipoprotein, putative, at 1,742,241 to 1,743,359
_1549
Psyr_1550: Psyr_1550 - Beta-lactamase-like protein, at 1,743,360 to 1,744,118
_1550
Psyr_1551: Psyr_1551 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,744,147 to 1,744,857
_1551
Position (kb) 1742
1743
1744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1741.275 kb on + strand at 1741.276 kb on - strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1742.232 kb on + strand at 1742.232 kb on + strand at 1742.232 kb on + strand at 1742.232 kb on + strand at 1742.276 kb on + strand at 1742.276 kb on + strand at 1742.276 kb on + strand at 1742.276 kb on + strand at 1742.325 kb on + strand at 1742.604 kb on + strand, within Psyr_1549 at 1742.604 kb on + strand, within Psyr_1549 at 1742.799 kb on + strand, within Psyr_1549 at 1742.799 kb on + strand, within Psyr_1549 at 1742.800 kb on - strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.940 kb on - strand, within Psyr_1549 at 1743.120 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.124 kb on - strand, within Psyr_1549 at 1743.422 kb on + strand at 1743.423 kb on - strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.427 kb on - strand at 1743.430 kb on + strand at 1743.514 kb on + strand, within Psyr_1550 at 1743.514 kb on + strand, within Psyr_1550 at 1743.588 kb on + strand, within Psyr_1550 at 1743.588 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 1,741,275 + -1.2 1,741,276 - -0.3 1,741,286 + -0.8 1,741,286 + +0.6 1,741,286 + -0.1 1,742,232 + -2.4 1,742,232 + -1.8 1,742,232 + +1.1 1,742,232 + -1.9 1,742,276 + -0.4 1,742,276 + -1.4 1,742,276 + -0.4 1,742,276 + -2.9 1,742,325 + +0.4 1,742,604 + Psyr_1549 0.32 -1.4 1,742,604 + Psyr_1549 0.32 -0.3 1,742,799 + Psyr_1549 0.50 +0.4 1,742,799 + Psyr_1549 0.50 -0.9 1,742,800 - Psyr_1549 0.50 -0.4 1,742,939 + Psyr_1549 0.62 -2.2 1,742,939 + Psyr_1549 0.62 -0.0 1,742,939 + Psyr_1549 0.62 -0.9 1,742,939 + Psyr_1549 0.62 -2.5 1,742,939 + Psyr_1549 0.62 -0.6 1,742,940 - Psyr_1549 0.62 +0.6 1,743,120 + Psyr_1549 0.79 -2.3 1,743,123 + Psyr_1549 0.79 +1.6 1,743,123 + Psyr_1549 0.79 +0.3 1,743,123 + Psyr_1549 0.79 -1.1 1,743,123 + Psyr_1549 0.79 -0.5 1,743,123 + Psyr_1549 0.79 -0.8 1,743,123 + Psyr_1549 0.79 -2.4 1,743,123 + Psyr_1549 0.79 -0.0 1,743,123 + Psyr_1549 0.79 -0.8 1,743,123 + Psyr_1549 0.79 +0.6 1,743,124 - Psyr_1549 0.79 -0.7 1,743,422 + +1.2 1,743,423 - +0.5 1,743,426 + +0.0 1,743,426 + +1.1 1,743,426 + +0.9 1,743,426 + +0.5 1,743,426 + -0.1 1,743,426 + -0.1 1,743,426 + +0.3 1,743,426 + +0.2 1,743,426 + +1.0 1,743,426 + -0.3 1,743,426 + -0.2 1,743,426 + +0.6 1,743,426 + -0.5 1,743,426 + +0.3 1,743,426 + -0.2 1,743,427 - +1.2 1,743,430 + +0.0 1,743,514 + Psyr_1550 0.20 +1.4 1,743,514 + Psyr_1550 0.20 +0.8 1,743,588 + Psyr_1550 0.30 +1.9 1,743,588 + Psyr_1550 0.30 +0.1 1,743,796 + Psyr_1550 0.57 -0.0 1,743,796 + Psyr_1550 0.57 +0.4 1,743,796 + Psyr_1550 0.57 +0.0 1,743,796 + Psyr_1550 0.57 +0.1 1,743,796 + Psyr_1550 0.57 +0.2 1,743,796 + Psyr_1550 0.57 +0.0 1,743,796 + Psyr_1550 0.57 +0.4 1,743,799 + Psyr_1550 0.58 -0.5 1,743,799 + Psyr_1550 0.58 +1.8 1,744,125 + +0.1 1,744,125 + -0.5 1,744,129 + +3.6 1,744,129 + +0.3 1,744,129 + -0.2
Or see this region's nucleotide sequence