Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0945

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0944 and Psyr_RNA19 are separated by 45 nucleotidesPsyr_RNA19 and Psyr_0945 are separated by 37 nucleotidesPsyr_0945 and Psyr_0946 are separated by 2 nucleotidesPsyr_0946 and Psyr_0947 are separated by 4 nucleotides Psyr_0944: Psyr_0944 - Ribose-phosphate pyrophosphokinase, at 1,079,101 to 1,080,042 _0944 Psyr_RNA19: Psyr_RNA19 - tRNA-Gln, at 1,080,088 to 1,080,162 _RNA19 Psyr_0945: Psyr_0945 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 1,080,200 to 1,081,048 _0945 Psyr_0946: Psyr_0946 - Outer membrane lipoprotein LolB, at 1,081,051 to 1,081,668 _0946 Psyr_0947: Psyr_0947 - TPR repeat protein:TPR repeat protein, at 1,081,673 to 1,083,343 _0947 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -1 0 1at 1080.054 kb on - strandat 1080.082 kb on - strandat 1081.797 kb on - strandat 1081.891 kb on - strand, within Psyr_0947at 1081.976 kb on - strand, within Psyr_0947at 1082.005 kb on - strand, within Psyr_0947

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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1,080,054 - +0.1
1,080,082 - +0.7
1,081,797 - -0.5
1,081,891 - Psyr_0947 0.13 +0.9
1,081,976 - Psyr_0947 0.18 -0.4
1,082,005 - Psyr_0947 0.20 -1.7

Or see this region's nucleotide sequence