Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0840

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0839 and Psyr_0840 are separated by 366 nucleotidesPsyr_0840 and Psyr_0841 are separated by 100 nucleotides Psyr_0839: Psyr_0839 - Deoxyribose-phosphate aldolase, at 950,669 to 951,454 _0839 Psyr_0840: Psyr_0840 - Pentapeptide repeat protein, at 951,821 to 952,165 _0840 Psyr_0841: Psyr_0841 - conserved hypothetical protein, at 952,266 to 953,936 _0841 Position (kb) 951 952 953Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 950.881 kb on + strand, within Psyr_0839at 950.882 kb on - strand, within Psyr_0839at 950.882 kb on - strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.950 kb on - strand, within Psyr_0839at 950.950 kb on - strand, within Psyr_0839at 950.993 kb on + strand, within Psyr_0839at 951.085 kb on + strand, within Psyr_0839at 951.086 kb on - strand, within Psyr_0839at 951.252 kb on + strand, within Psyr_0839at 951.314 kb on + strand, within Psyr_0839at 951.314 kb on + strand, within Psyr_0839at 951.314 kb on + strand, within Psyr_0839at 951.314 kb on + strand, within Psyr_0839at 951.314 kb on + strand, within Psyr_0839at 951.315 kb on - strand, within Psyr_0839at 951.315 kb on - strand, within Psyr_0839at 951.315 kb on - strand, within Psyr_0839at 951.535 kb on + strandat 951.678 kb on - strandat 951.688 kb on + strandat 951.689 kb on - strandat 951.689 kb on - strandat 951.702 kb on + strandat 951.702 kb on + strandat 951.702 kb on + strandat 951.709 kb on + strandat 951.710 kb on - strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.768 kb on - strandat 951.815 kb on - strandat 951.949 kb on + strand, within Psyr_0840at 951.991 kb on - strand, within Psyr_0840at 952.129 kb on + strand, within Psyr_0840at 952.129 kb on + strand, within Psyr_0840at 952.129 kb on + strand, within Psyr_0840at 952.129 kb on + strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.267 kb on + strandat 952.561 kb on + strand, within Psyr_0841at 952.561 kb on + strand, within Psyr_0841at 952.562 kb on - strand, within Psyr_0841at 952.562 kb on - strand, within Psyr_0841at 952.562 kb on - strand, within Psyr_0841at 952.575 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.657 kb on + strand, within Psyr_0841at 952.658 kb on - strand, within Psyr_0841at 952.699 kb on - strand, within Psyr_0841at 952.699 kb on - strand, within Psyr_0841at 952.699 kb on - strand, within Psyr_0841at 952.817 kb on - strand, within Psyr_0841at 952.817 kb on - strand, within Psyr_0841at 952.817 kb on - strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.838 kb on - strand, within Psyr_0841at 952.838 kb on - strand, within Psyr_0841at 952.940 kb on + strand, within Psyr_0841at 952.943 kb on - strand, within Psyr_0841at 952.991 kb on - strand, within Psyr_0841at 953.068 kb on + strand, within Psyr_0841at 953.068 kb on + strand, within Psyr_0841

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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950,881 + Psyr_0839 0.27 +0.7
950,882 - Psyr_0839 0.27 +1.5
950,882 - Psyr_0839 0.27 +0.6
950,949 + Psyr_0839 0.36 +0.2
950,949 + Psyr_0839 0.36 +0.0
950,949 + Psyr_0839 0.36 +0.7
950,949 + Psyr_0839 0.36 -0.4
950,949 + Psyr_0839 0.36 +0.0
950,949 + Psyr_0839 0.36 +1.4
950,950 - Psyr_0839 0.36 -0.5
950,950 - Psyr_0839 0.36 -0.5
950,993 + Psyr_0839 0.41 +1.0
951,085 + Psyr_0839 0.53 +1.7
951,086 - Psyr_0839 0.53 -0.0
951,252 + Psyr_0839 0.74 -0.6
951,314 + Psyr_0839 0.82 +0.7
951,314 + Psyr_0839 0.82 -0.1
951,314 + Psyr_0839 0.82 -0.0
951,314 + Psyr_0839 0.82 -0.4
951,314 + Psyr_0839 0.82 +2.8
951,315 - Psyr_0839 0.82 +0.0
951,315 - Psyr_0839 0.82 -0.0
951,315 - Psyr_0839 0.82 -0.6
951,535 + -0.1
951,678 - -0.6
951,688 + +0.3
951,689 - +2.2
951,689 - -0.0
951,702 + +0.7
951,702 + +0.2
951,702 + +0.3
951,709 + +0.3
951,710 - +0.8
951,767 + +0.3
951,767 + -0.4
951,767 + +1.4
951,767 + -0.1
951,767 + +0.8
951,767 + +0.3
951,768 - +0.3
951,815 - +0.8
951,949 + Psyr_0840 0.37 -0.2
951,991 - Psyr_0840 0.49 +0.9
952,129 + Psyr_0840 0.89 -0.5
952,129 + Psyr_0840 0.89 +0.3
952,129 + Psyr_0840 0.89 +0.1
952,129 + Psyr_0840 0.89 -1.0
952,130 - Psyr_0840 0.90 -0.6
952,130 - Psyr_0840 0.90 -0.1
952,130 - Psyr_0840 0.90 +0.1
952,130 - Psyr_0840 0.90 +0.1
952,130 - Psyr_0840 0.90 +4.3
952,130 - Psyr_0840 0.90 -0.0
952,130 - Psyr_0840 0.90 -1.8
952,130 - Psyr_0840 0.90 -0.8
952,130 - Psyr_0840 0.90 -1.8
952,130 - Psyr_0840 0.90 -0.3
952,130 - Psyr_0840 0.90 +0.3
952,130 - Psyr_0840 0.90 -0.7
952,130 - Psyr_0840 0.90 -0.1
952,130 - Psyr_0840 0.90 +0.5
952,130 - Psyr_0840 0.90 +0.8
952,130 - Psyr_0840 0.90 +0.5
952,131 + -1.5
952,131 + -0.6
952,131 + +0.9
952,131 + +0.5
952,131 + -0.8
952,131 + +0.5
952,131 + -0.4
952,131 + -0.2
952,131 + +0.4
952,131 + -0.2
952,131 + +1.3
952,132 - +0.3
952,132 - +0.6
952,132 - -0.1
952,132 - +0.4
952,132 - +0.1
952,132 - +0.8
952,267 + +0.6
952,561 + Psyr_0841 0.18 +1.4
952,561 + Psyr_0841 0.18 +0.5
952,562 - Psyr_0841 0.18 +0.5
952,562 - Psyr_0841 0.18 +0.5
952,562 - Psyr_0841 0.18 -0.9
952,575 + Psyr_0841 0.18 +1.0
952,630 + Psyr_0841 0.22 +0.2
952,630 + Psyr_0841 0.22 +0.5
952,630 + Psyr_0841 0.22 +0.4
952,630 + Psyr_0841 0.22 -0.0
952,630 + Psyr_0841 0.22 +0.3
952,630 + Psyr_0841 0.22 +0.0
952,630 + Psyr_0841 0.22 +1.3
952,631 - Psyr_0841 0.22 +0.6
952,631 - Psyr_0841 0.22 +0.3
952,631 - Psyr_0841 0.22 +0.0
952,631 - Psyr_0841 0.22 -1.4
952,631 - Psyr_0841 0.22 +1.7
952,631 - Psyr_0841 0.22 -0.1
952,631 - Psyr_0841 0.22 -0.3
952,631 - Psyr_0841 0.22 +0.1
952,631 - Psyr_0841 0.22 +0.4
952,657 + Psyr_0841 0.23 +0.8
952,658 - Psyr_0841 0.23 +2.1
952,699 - Psyr_0841 0.26 +1.4
952,699 - Psyr_0841 0.26 +0.7
952,699 - Psyr_0841 0.26 -0.5
952,817 - Psyr_0841 0.33 -0.5
952,817 - Psyr_0841 0.33 +0.4
952,817 - Psyr_0841 0.33 +0.1
952,837 + Psyr_0841 0.34 -0.8
952,837 + Psyr_0841 0.34 +0.4
952,837 + Psyr_0841 0.34 -0.2
952,838 - Psyr_0841 0.34 +0.4
952,838 - Psyr_0841 0.34 +1.3
952,940 + Psyr_0841 0.40 -0.5
952,943 - Psyr_0841 0.41 +1.2
952,991 - Psyr_0841 0.43 +0.9
953,068 + Psyr_0841 0.48 -1.1
953,068 + Psyr_0841 0.48 -0.8

Or see this region's nucleotide sequence