Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4689

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Dimethyl Sulfoxide 1.25 vol%
5,555,975	+				-1.3
5,555,975	+				-3.0
5,555,976	-				-0.4
5,555,976	-				+1.4
5,555,976	-				-0.9
5,555,976	-				+0.1
5,555,976	-				-0.6
5,556,025	-				+0.4
5,556,059	-				-0.9
5,556,059	-				+0.0
5,556,059	-				+0.5
5,556,210	-		Psyr_4688	0.30	-0.7
5,556,235	-		Psyr_4688	0.33	+0.4
5,556,235	-		Psyr_4688	0.33	+2.9
5,556,275	+		Psyr_4688	0.39	+0.4
5,556,275	+		Psyr_4688	0.39	+0.3
5,556,281	+		Psyr_4688	0.39	-0.3
5,556,281	+		Psyr_4688	0.39	-0.6
5,556,281	+		Psyr_4688	0.39	+0.1
5,556,325	-		Psyr_4688	0.45	+0.3
5,556,414	+		Psyr_4688	0.58	+0.5
5,556,415	-		Psyr_4688	0.58	+1.1
5,556,583	+		Psyr_4688	0.81	-0.6
5,556,655	+				+0.4
5,556,690	+				-0.4
5,556,690	+				-0.8
5,556,691	-				+1.2
5,556,691	-				+0.1
5,556,691	-				+0.2
5,556,691	-				-0.0
5,556,741	+				+0.7
5,556,742	-				+0.7
5,556,744	+				-0.4
5,556,744	+				+0.7
5,556,744	+				+0.8
5,556,745	-				+0.3
5,556,745	-				+1.1
5,556,745	-				+0.0
5,556,745	-				-0.6
5,556,829	+				-0.7
5,556,830	-				+0.4
5,556,830	-				+0.7
5,556,830	-				-0.1
5,556,880	+				-0.2
5,556,932	+				+0.6
5,556,932	+				-0.2
5,556,932	+				+0.3
5,556,933	-				-1.2
5,556,933	-				-0.5
5,556,984	+		Psyr_4689	0.16	+0.8
5,556,984	+		Psyr_4689	0.16	+0.5
5,556,985	-		Psyr_4689	0.16	-0.4
5,556,985	-		Psyr_4689	0.16	-0.4
5,556,985	-		Psyr_4689	0.16	-0.2
5,557,079	+		Psyr_4689	0.28	-0.7
5,557,079	+		Psyr_4689	0.28	+0.0
5,557,079	+		Psyr_4689	0.28	-2.0
5,557,297	+		Psyr_4689	0.57	-0.4
5,557,297	+		Psyr_4689	0.57	+0.8
5,557,297	+		Psyr_4689	0.57	-0.3
5,557,297	+		Psyr_4689	0.57	+0.3
5,557,297	+		Psyr_4689	0.57	+0.1
5,557,297	+		Psyr_4689	0.57	-0.2
5,557,298	-		Psyr_4689	0.57	+1.3
5,557,298	-		Psyr_4689	0.57	+0.7
5,557,489	+		Psyr_4689	0.82	+0.3
5,557,489	+		Psyr_4689	0.82	+2.8
5,557,489	+		Psyr_4689	0.82	+0.6
5,557,489	+		Psyr_4689	0.82	-0.0
5,557,489	+		Psyr_4689	0.82	+2.0
5,557,489	+		Psyr_4689	0.82	-0.4
5,557,489	+		Psyr_4689	0.82	+1.3
5,557,490	-		Psyr_4689	0.82	+0.8
5,557,490	-		Psyr_4689	0.82	-0.5
5,557,490	-		Psyr_4689	0.82	-0.2
5,557,490	-		Psyr_4689	0.82	+0.6
5,557,490	-		Psyr_4689	0.82	-1.4
5,557,627	-				+0.1
5,557,627	-				-0.4
5,557,665	+				+0.5
5,557,666	-				+0.2
5,557,666	-				+0.4
5,557,676	+				-0.2
5,557,676	+				+0.3
5,557,717	+				-0.1
5,557,717	+				+0.0
5,557,718	-				-0.3
5,557,718	-				+2.7
5,557,718	-				+2.1
5,557,718	-				+0.3
5,557,720	+				+1.2
5,557,720	+				-0.1
5,557,720	+				+0.0
5,557,721	-				+0.2
5,557,721	-				+0.5
5,558,136	+		Psyr_4690	0.22	+0.8
5,558,136	+		Psyr_4690	0.22	+0.3
5,558,136	+		Psyr_4690	0.22	+0.1
5,558,137	-		Psyr_4690	0.22	-0.2
5,558,137	-		Psyr_4690	0.22	-0.4
5,558,137	-		Psyr_4690	0.22	-1.6
5,558,137	-		Psyr_4690	0.22	-1.9
5,558,145	+		Psyr_4690	0.23	-0.0
5,558,145	+		Psyr_4690	0.23	+0.8
5,558,146	-		Psyr_4690	0.23	+1.0
5,558,146	-		Psyr_4690	0.23	-0.1
5,558,236	+		Psyr_4690	0.28	+0.5
5,558,236	+		Psyr_4690	0.28	-0.3
5,558,236	+		Psyr_4690	0.28	+1.4
5,558,236	+		Psyr_4690	0.28	+1.6
5,558,236	+		Psyr_4690	0.28	-0.8
5,558,237	-		Psyr_4690	0.28	+1.0
5,558,237	-		Psyr_4690	0.28	+0.2
5,558,237	-		Psyr_4690	0.28	-1.6
5,558,237	-		Psyr_4690	0.28	+0.6
5,558,280	+		Psyr_4690	0.30	+0.7
5,558,280	+		Psyr_4690	0.30	+0.3
5,558,303	+		Psyr_4690	0.31	+0.4
5,558,304	-		Psyr_4690	0.31	+1.1
5,558,430	+		Psyr_4690	0.38	-0.4
5,558,430	+		Psyr_4690	0.38	-0.3
5,558,430	+		Psyr_4690	0.38	-0.9
5,558,431	-		Psyr_4690	0.38	+0.8
5,558,431	-		Psyr_4690	0.38	+0.5
5,558,431	-		Psyr_4690	0.38	+0.1