Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4257 and Psyr_4258 are separated by 120 nucleotides Psyr_4258 and Psyr_4259 are separated by 168 nucleotides Psyr_4259 and Psyr_4260 are separated by 276 nucleotides Psyr_4260 and Psyr_4261 are separated by 62 nucleotides
Psyr_4257: Psyr_4257 - Uncharacterized protein UPF0114, at 5,074,073 to 5,074,561
_4257
Psyr_4258: Psyr_4258 - conserved hypothetical protein, at 5,074,682 to 5,075,011
_4258
Psyr_4259: Psyr_4259 - ATP-dependent protease, putative, at 5,075,180 to 5,077,615
_4259
Psyr_4260: Psyr_4260 - conserved hypothetical protein, at 5,077,892 to 5,078,380
_4260
Psyr_4261: Psyr_4261 - conserved hypothetical protein, at 5,078,443 to 5,080,296
_4261
Position (kb) 5075
5076
5077
5078 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5074.265 kb on - strand, within Psyr_4257 at 5074.265 kb on - strand, within Psyr_4257 at 5074.503 kb on + strand, within Psyr_4257 at 5074.503 kb on + strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.565 kb on + strand at 5074.566 kb on - strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.600 kb on - strand at 5074.683 kb on + strand at 5074.684 kb on - strand at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.762 kb on + strand, within Psyr_4258 at 5074.762 kb on + strand, within Psyr_4258 at 5074.763 kb on - strand, within Psyr_4258 at 5074.763 kb on - strand, within Psyr_4258 at 5074.810 kb on + strand, within Psyr_4258 at 5075.035 kb on + strand at 5075.035 kb on + strand at 5075.035 kb on + strand at 5075.036 kb on - strand at 5075.036 kb on - strand at 5075.036 kb on - strand at 5075.381 kb on + strand at 5075.381 kb on + strand at 5075.382 kb on - strand at 5075.382 kb on - strand at 5075.382 kb on - strand at 5075.388 kb on + strand at 5075.388 kb on + strand at 5075.388 kb on + strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.420 kb on + strand at 5075.674 kb on - strand, within Psyr_4259 at 5075.679 kb on + strand, within Psyr_4259 at 5075.680 kb on - strand, within Psyr_4259 at 5076.153 kb on + strand, within Psyr_4259 at 5076.153 kb on + strand, within Psyr_4259 at 5076.153 kb on + strand, within Psyr_4259 at 5076.153 kb on + strand, within Psyr_4259 at 5076.154 kb on - strand, within Psyr_4259 at 5076.154 kb on - strand, within Psyr_4259 at 5076.154 kb on - strand, within Psyr_4259 at 5076.154 kb on - strand, within Psyr_4259 at 5076.154 kb on - strand, within Psyr_4259 at 5076.333 kb on + strand, within Psyr_4259 at 5076.333 kb on + strand, within Psyr_4259 at 5076.333 kb on + strand, within Psyr_4259 at 5076.333 kb on + strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.334 kb on - strand, within Psyr_4259 at 5076.336 kb on + strand, within Psyr_4259 at 5076.336 kb on + strand, within Psyr_4259 at 5076.336 kb on + strand, within Psyr_4259 at 5076.336 kb on + strand, within Psyr_4259 at 5076.337 kb on - strand, within Psyr_4259 at 5076.337 kb on - strand, within Psyr_4259 at 5076.583 kb on - strand, within Psyr_4259 at 5076.583 kb on - strand, within Psyr_4259 at 5076.607 kb on - strand, within Psyr_4259 at 5076.607 kb on - strand, within Psyr_4259 at 5076.633 kb on + strand, within Psyr_4259 at 5076.633 kb on + strand, within Psyr_4259 at 5076.633 kb on + strand, within Psyr_4259 at 5076.633 kb on + strand, within Psyr_4259 at 5076.634 kb on - strand, within Psyr_4259 at 5076.634 kb on - strand, within Psyr_4259 at 5076.634 kb on - strand, within Psyr_4259 at 5076.634 kb on - strand, within Psyr_4259 at 5076.634 kb on - strand, within Psyr_4259 at 5076.705 kb on + strand, within Psyr_4259 at 5076.706 kb on - strand, within Psyr_4259 at 5076.706 kb on - strand, within Psyr_4259 at 5076.706 kb on - strand, within Psyr_4259 at 5076.706 kb on - strand, within Psyr_4259 at 5076.786 kb on + strand, within Psyr_4259 at 5076.786 kb on + strand, within Psyr_4259 at 5076.786 kb on + strand, within Psyr_4259 at 5076.786 kb on + strand, within Psyr_4259 at 5076.786 kb on + strand, within Psyr_4259 at 5076.786 kb on + strand, within Psyr_4259 at 5076.787 kb on - strand, within Psyr_4259 at 5076.787 kb on - strand, within Psyr_4259 at 5076.787 kb on - strand, within Psyr_4259 at 5076.807 kb on + strand, within Psyr_4259 at 5076.834 kb on + strand, within Psyr_4259 at 5076.834 kb on + strand, within Psyr_4259 at 5076.979 kb on + strand, within Psyr_4259 at 5076.979 kb on + strand, within Psyr_4259 at 5076.980 kb on - strand, within Psyr_4259 at 5076.980 kb on - strand, within Psyr_4259 at 5076.980 kb on - strand, within Psyr_4259 at 5077.192 kb on - strand, within Psyr_4259 at 5077.277 kb on - strand, within Psyr_4259 at 5077.277 kb on - strand, within Psyr_4259 at 5077.332 kb on + strand, within Psyr_4259 at 5077.332 kb on + strand, within Psyr_4259 at 5077.332 kb on + strand, within Psyr_4259 at 5077.437 kb on + strand at 5077.437 kb on + strand at 5077.438 kb on - strand at 5077.589 kb on + strand at 5077.589 kb on + strand at 5077.590 kb on - strand at 5077.590 kb on - strand at 5077.590 kb on - strand at 5077.590 kb on - strand at 5077.619 kb on + strand at 5077.619 kb on + strand at 5077.620 kb on - strand at 5077.620 kb on - strand at 5077.626 kb on + strand at 5077.626 kb on + strand at 5077.626 kb on + strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.668 kb on - strand at 5077.753 kb on + strand at 5077.753 kb on + strand at 5077.754 kb on - strand at 5077.754 kb on - strand at 5077.756 kb on + strand at 5077.756 kb on + strand at 5077.756 kb on + strand at 5077.757 kb on - strand at 5077.757 kb on - strand at 5077.763 kb on + strand at 5077.793 kb on + strand at 5077.842 kb on + strand at 5077.842 kb on + strand at 5077.842 kb on + strand at 5077.842 kb on + strand at 5077.842 kb on + strand at 5077.843 kb on - strand at 5077.843 kb on - strand at 5077.875 kb on + strand at 5077.876 kb on - strand at 5077.892 kb on - strand at 5077.892 kb on - strand at 5077.892 kb on - strand at 5078.114 kb on + strand, within Psyr_4260 at 5078.114 kb on + strand, within Psyr_4260 at 5078.114 kb on + strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.214 kb on + strand, within Psyr_4260 at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.378 kb on + strand at 5078.431 kb on + strand at 5078.431 kb on + strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.459 kb on + strand at 5078.459 kb on + strand at 5078.460 kb on - strand at 5078.489 kb on + strand at 5078.567 kb on - strand at 5078.599 kb on + strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,074,265 - Psyr_4257 0.39 +0.3 5,074,265 - Psyr_4257 0.39 -0.2 5,074,503 + Psyr_4257 0.88 +0.2 5,074,503 + Psyr_4257 0.88 -0.8 5,074,504 - Psyr_4257 0.88 +0.4 5,074,504 - Psyr_4257 0.88 +1.3 5,074,533 + +0.0 5,074,533 + -0.4 5,074,533 + +0.2 5,074,533 + +0.6 5,074,533 + +0.9 5,074,533 + -1.0 5,074,533 + +0.3 5,074,533 + +0.9 5,074,533 + -0.7 5,074,534 - -1.0 5,074,534 - -1.0 5,074,534 - -0.3 5,074,534 - -0.8 5,074,534 - -2.4 5,074,534 - +0.3 5,074,534 - +1.3 5,074,534 - +0.5 5,074,534 - -0.4 5,074,534 - +0.4 5,074,534 - +0.0 5,074,534 - -0.4 5,074,534 - +0.3 5,074,534 - -0.1 5,074,565 + +0.7 5,074,566 - -0.6 5,074,597 + +1.0 5,074,597 + +0.7 5,074,597 + -0.6 5,074,597 + +1.1 5,074,597 + -0.3 5,074,598 - +0.8 5,074,598 - -1.1 5,074,598 - +2.0 5,074,598 - +0.3 5,074,598 - +0.2 5,074,598 - -0.5 5,074,598 - -0.3 5,074,600 - +1.5 5,074,683 + -0.8 5,074,684 - -0.6 5,074,745 + Psyr_4258 0.19 -0.1 5,074,745 + Psyr_4258 0.19 -0.3 5,074,745 + Psyr_4258 0.19 +0.2 5,074,745 + Psyr_4258 0.19 +0.3 5,074,745 + Psyr_4258 0.19 +0.4 5,074,745 + Psyr_4258 0.19 -0.8 5,074,745 + Psyr_4258 0.19 -0.7 5,074,745 + Psyr_4258 0.19 +0.7 5,074,746 - Psyr_4258 0.19 -0.4 5,074,746 - Psyr_4258 0.19 +2.5 5,074,746 - Psyr_4258 0.19 +1.2 5,074,746 - Psyr_4258 0.19 -1.8 5,074,746 - Psyr_4258 0.19 -1.3 5,074,746 - Psyr_4258 0.19 +0.5 5,074,746 - Psyr_4258 0.19 +3.2 5,074,746 - Psyr_4258 0.19 -1.2 5,074,762 + Psyr_4258 0.24 -0.0 5,074,762 + Psyr_4258 0.24 -0.2 5,074,763 - Psyr_4258 0.25 +0.1 5,074,763 - Psyr_4258 0.25 -0.5 5,074,810 + Psyr_4258 0.39 -0.3 5,075,035 + +0.4 5,075,035 + +0.7 5,075,035 + +1.4 5,075,036 - -1.0 5,075,036 - +1.7 5,075,036 - +0.3 5,075,381 + +2.3 5,075,381 + -0.0 5,075,382 - +0.5 5,075,382 - -0.1 5,075,382 - -0.2 5,075,388 + -0.0 5,075,388 + +0.4 5,075,388 + -0.3 5,075,389 - -0.4 5,075,389 - +0.1 5,075,389 - +0.1 5,075,420 + +0.8 5,075,674 - Psyr_4259 0.20 +0.3 5,075,679 + Psyr_4259 0.20 -0.2 5,075,680 - Psyr_4259 0.21 +0.9 5,076,153 + Psyr_4259 0.40 -1.1 5,076,153 + Psyr_4259 0.40 -0.6 5,076,153 + Psyr_4259 0.40 -0.2 5,076,153 + Psyr_4259 0.40 -0.0 5,076,154 - Psyr_4259 0.40 -0.3 5,076,154 - Psyr_4259 0.40 -0.0 5,076,154 - Psyr_4259 0.40 +1.2 5,076,154 - Psyr_4259 0.40 +1.6 5,076,154 - Psyr_4259 0.40 +1.3 5,076,333 + Psyr_4259 0.47 -0.5 5,076,333 + Psyr_4259 0.47 -0.8 5,076,333 + Psyr_4259 0.47 +0.1 5,076,333 + Psyr_4259 0.47 -1.6 5,076,334 - Psyr_4259 0.47 +0.6 5,076,334 - Psyr_4259 0.47 +0.4 5,076,334 - Psyr_4259 0.47 -1.3 5,076,334 - Psyr_4259 0.47 +0.5 5,076,334 - Psyr_4259 0.47 +2.3 5,076,334 - Psyr_4259 0.47 +0.4 5,076,334 - Psyr_4259 0.47 -0.1 5,076,334 - Psyr_4259 0.47 +0.4 5,076,334 - Psyr_4259 0.47 +0.0 5,076,334 - Psyr_4259 0.47 +0.9 5,076,334 - Psyr_4259 0.47 -0.2 5,076,334 - Psyr_4259 0.47 -0.5 5,076,336 + Psyr_4259 0.47 +1.0 5,076,336 + Psyr_4259 0.47 +0.3 5,076,336 + Psyr_4259 0.47 +0.2 5,076,336 + Psyr_4259 0.47 +0.1 5,076,337 - Psyr_4259 0.47 +1.2 5,076,337 - Psyr_4259 0.47 -0.1 5,076,583 - Psyr_4259 0.58 +2.6 5,076,583 - Psyr_4259 0.58 -1.6 5,076,607 - Psyr_4259 0.59 +0.4 5,076,607 - Psyr_4259 0.59 -0.5 5,076,633 + Psyr_4259 0.60 -0.1 5,076,633 + Psyr_4259 0.60 -0.9 5,076,633 + Psyr_4259 0.60 +0.1 5,076,633 + Psyr_4259 0.60 -0.3 5,076,634 - Psyr_4259 0.60 +0.8 5,076,634 - Psyr_4259 0.60 +0.3 5,076,634 - Psyr_4259 0.60 -0.3 5,076,634 - Psyr_4259 0.60 -0.8 5,076,634 - Psyr_4259 0.60 +2.2 5,076,705 + Psyr_4259 0.63 -1.1 5,076,706 - Psyr_4259 0.63 -0.2 5,076,706 - Psyr_4259 0.63 +1.3 5,076,706 - Psyr_4259 0.63 -0.2 5,076,706 - Psyr_4259 0.63 -0.8 5,076,786 + Psyr_4259 0.66 -0.3 5,076,786 + Psyr_4259 0.66 -0.1 5,076,786 + Psyr_4259 0.66 +0.5 5,076,786 + Psyr_4259 0.66 +0.2 5,076,786 + Psyr_4259 0.66 +1.4 5,076,786 + Psyr_4259 0.66 +2.5 5,076,787 - Psyr_4259 0.66 +0.3 5,076,787 - Psyr_4259 0.66 +0.2 5,076,787 - Psyr_4259 0.66 +0.2 5,076,807 + Psyr_4259 0.67 +1.7 5,076,834 + Psyr_4259 0.68 -0.2 5,076,834 + Psyr_4259 0.68 +0.6 5,076,979 + Psyr_4259 0.74 +0.2 5,076,979 + Psyr_4259 0.74 +0.5 5,076,980 - Psyr_4259 0.74 +0.5 5,076,980 - Psyr_4259 0.74 +0.2 5,076,980 - Psyr_4259 0.74 +0.7 5,077,192 - Psyr_4259 0.83 +1.0 5,077,277 - Psyr_4259 0.86 -1.2 5,077,277 - Psyr_4259 0.86 -0.2 5,077,332 + Psyr_4259 0.88 +0.8 5,077,332 + Psyr_4259 0.88 +0.0 5,077,332 + Psyr_4259 0.88 +0.0 5,077,437 + -0.7 5,077,437 + +0.1 5,077,438 - +0.0 5,077,589 + -0.5 5,077,589 + +0.1 5,077,590 - +0.6 5,077,590 - -0.6 5,077,590 - +1.4 5,077,590 - -1.4 5,077,619 + -0.6 5,077,619 + +0.5 5,077,620 - +0.1 5,077,620 - -1.6 5,077,626 + -0.6 5,077,626 + -0.5 5,077,626 + -0.3 5,077,627 - -0.4 5,077,627 - +0.7 5,077,627 - +1.5 5,077,668 - +0.4 5,077,753 + +0.6 5,077,753 + +0.1 5,077,754 - +1.4 5,077,754 - +1.0 5,077,756 + -0.6 5,077,756 + +0.4 5,077,756 + -0.5 5,077,757 - -0.1 5,077,757 - +0.3 5,077,763 + +0.3 5,077,793 + +1.0 5,077,842 + -0.5 5,077,842 + -0.1 5,077,842 + -0.1 5,077,842 + +0.9 5,077,842 + +0.0 5,077,843 - -0.0 5,077,843 - +0.1 5,077,875 + +0.2 5,077,876 - -0.8 5,077,892 - +0.4 5,077,892 - -1.5 5,077,892 - -0.8 5,078,114 + Psyr_4260 0.45 -0.7 5,078,114 + Psyr_4260 0.45 -1.5 5,078,114 + Psyr_4260 0.45 +0.5 5,078,115 - Psyr_4260 0.46 +0.7 5,078,115 - Psyr_4260 0.46 +0.7 5,078,115 - Psyr_4260 0.46 -0.3 5,078,204 + Psyr_4260 0.64 -0.0 5,078,204 + Psyr_4260 0.64 +1.1 5,078,204 + Psyr_4260 0.64 -0.0 5,078,204 + Psyr_4260 0.64 -0.0 5,078,204 + Psyr_4260 0.64 +0.7 5,078,204 + Psyr_4260 0.64 +0.5 5,078,204 + Psyr_4260 0.64 +0.3 5,078,205 - Psyr_4260 0.64 -0.7 5,078,205 - Psyr_4260 0.64 +0.0 5,078,205 - Psyr_4260 0.64 -0.8 5,078,205 - Psyr_4260 0.64 -0.5 5,078,205 - Psyr_4260 0.64 -0.2 5,078,205 - Psyr_4260 0.64 -0.3 5,078,205 - Psyr_4260 0.64 +0.5 5,078,214 + Psyr_4260 0.66 +0.5 5,078,363 + -1.4 5,078,363 + -0.2 5,078,363 + -0.1 5,078,363 + +1.0 5,078,363 + -0.1 5,078,363 + +0.7 5,078,363 + +0.3 5,078,363 + +1.0 5,078,363 + -0.7 5,078,363 + -2.1 5,078,363 + +0.4 5,078,364 - -1.1 5,078,364 - +0.7 5,078,364 - +0.7 5,078,364 - -0.4 5,078,364 - +2.0 5,078,364 - +0.2 5,078,364 - -2.6 5,078,378 + -0.3 5,078,431 + +1.5 5,078,431 + +2.1 5,078,443 - -0.4 5,078,443 - +0.0 5,078,443 - -0.3 5,078,443 - -1.8 5,078,459 + +0.2 5,078,459 + +0.7 5,078,460 - -1.3 5,078,489 + +0.1 5,078,567 - +0.5 5,078,599 + +0.4 5,078,600 - -0.1 5,078,600 - -0.7 5,078,600 - -0.4 5,078,600 - -1.4 5,078,600 - -0.5 5,078,600 - +0.6 5,078,600 - +0.7 5,078,600 - +1.2
Or see this region's nucleotide sequence