Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4025 and Psyr_4026 are separated by 50 nucleotides Psyr_4026 and Psyr_4027 are separated by 28 nucleotides Psyr_4027 and Psyr_4028 are separated by 203 nucleotides
Psyr_4025: Psyr_4025 - ATPase, at 4,793,247 to 4,794,287
_4025
Psyr_4026: Psyr_4026 - Protein of unknown function DUF58, at 4,794,338 to 4,795,627
_4026
Psyr_4027: Psyr_4027 - conserved hypothetical protein, at 4,795,656 to 4,796,015
_4027
Psyr_4028: Psyr_4028 - lipoprotein, putative, at 4,796,219 to 4,796,614
_4028
Position (kb) 4794
4795
4796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4793.584 kb on - strand, within Psyr_4025 at 4793.799 kb on + strand, within Psyr_4025 at 4793.799 kb on + strand, within Psyr_4025 at 4793.800 kb on - strand, within Psyr_4025 at 4793.800 kb on - strand, within Psyr_4025 at 4793.800 kb on - strand, within Psyr_4025 at 4794.019 kb on - strand, within Psyr_4025 at 4794.019 kb on - strand, within Psyr_4025 at 4794.410 kb on + strand at 4794.992 kb on + strand, within Psyr_4026 at 4794.992 kb on + strand, within Psyr_4026 at 4795.112 kb on + strand, within Psyr_4026 at 4795.112 kb on + strand, within Psyr_4026 at 4795.112 kb on + strand, within Psyr_4026 at 4795.112 kb on + strand, within Psyr_4026 at 4795.112 kb on + strand, within Psyr_4026 at 4795.112 kb on + strand, within Psyr_4026 at 4795.112 kb on + strand, within Psyr_4026 at 4795.112 kb on + strand, within Psyr_4026 at 4795.113 kb on - strand, within Psyr_4026 at 4795.113 kb on - strand, within Psyr_4026 at 4795.113 kb on - strand, within Psyr_4026 at 4795.113 kb on - strand, within Psyr_4026 at 4795.113 kb on - strand, within Psyr_4026 at 4795.175 kb on + strand, within Psyr_4026 at 4795.176 kb on - strand, within Psyr_4026 at 4795.229 kb on + strand, within Psyr_4026 at 4795.229 kb on + strand, within Psyr_4026 at 4795.230 kb on - strand, within Psyr_4026 at 4795.230 kb on - strand, within Psyr_4026 at 4795.422 kb on + strand, within Psyr_4026 at 4795.422 kb on + strand, within Psyr_4026 at 4795.423 kb on - strand, within Psyr_4026 at 4795.457 kb on + strand, within Psyr_4026 at 4795.457 kb on + strand, within Psyr_4026 at 4795.458 kb on - strand, within Psyr_4026 at 4795.458 kb on - strand, within Psyr_4026 at 4795.458 kb on - strand, within Psyr_4026 at 4795.458 kb on - strand, within Psyr_4026 at 4795.476 kb on - strand, within Psyr_4026 at 4795.476 kb on - strand, within Psyr_4026 at 4795.595 kb on + strand at 4795.595 kb on + strand at 4795.596 kb on - strand at 4795.624 kb on - strand at 4795.672 kb on + strand at 4795.693 kb on + strand, within Psyr_4027 at 4795.693 kb on + strand, within Psyr_4027 at 4795.693 kb on + strand, within Psyr_4027 at 4795.693 kb on + strand, within Psyr_4027 at 4795.693 kb on + strand, within Psyr_4027 at 4795.694 kb on - strand, within Psyr_4027 at 4795.694 kb on - strand, within Psyr_4027 at 4795.694 kb on - strand, within Psyr_4027 at 4795.694 kb on - strand, within Psyr_4027 at 4795.694 kb on - strand, within Psyr_4027 at 4795.694 kb on - strand, within Psyr_4027 at 4795.694 kb on - strand, within Psyr_4027 at 4795.694 kb on - strand, within Psyr_4027 at 4795.723 kb on + strand, within Psyr_4027 at 4795.723 kb on + strand, within Psyr_4027 at 4795.724 kb on - strand, within Psyr_4027 at 4795.762 kb on + strand, within Psyr_4027 at 4795.762 kb on + strand, within Psyr_4027 at 4795.762 kb on + strand, within Psyr_4027 at 4795.762 kb on + strand, within Psyr_4027 at 4795.763 kb on - strand, within Psyr_4027 at 4795.763 kb on - strand, within Psyr_4027 at 4795.895 kb on + strand, within Psyr_4027 at 4795.896 kb on - strand, within Psyr_4027 at 4795.972 kb on + strand, within Psyr_4027 at 4795.972 kb on + strand, within Psyr_4027 at 4796.009 kb on + strand at 4796.009 kb on + strand at 4796.010 kb on - strand at 4796.010 kb on - strand at 4796.010 kb on - strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.082 kb on + strand at 4796.160 kb on + strand at 4796.161 kb on - strand at 4796.161 kb on - strand at 4796.171 kb on + strand at 4796.172 kb on - strand at 4796.217 kb on - strand at 4796.220 kb on + strand at 4796.220 kb on + strand at 4796.220 kb on + strand at 4796.220 kb on + strand at 4796.220 kb on + strand at 4796.221 kb on - strand at 4796.249 kb on + strand at 4796.249 kb on + strand at 4796.249 kb on + strand at 4796.250 kb on - strand at 4796.335 kb on - strand, within Psyr_4028 at 4796.370 kb on + strand, within Psyr_4028 at 4796.391 kb on + strand, within Psyr_4028 at 4796.391 kb on + strand, within Psyr_4028 at 4796.588 kb on + strand at 4796.589 kb on - strand at 4796.591 kb on + strand at 4796.591 kb on + strand at 4796.591 kb on + strand at 4796.591 kb on + strand at 4796.592 kb on - strand at 4796.592 kb on - strand at 4796.592 kb on - strand at 4796.603 kb on + strand at 4796.608 kb on + strand at 4796.608 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 4,793,584 - Psyr_4025 0.32 -0.4 4,793,799 + Psyr_4025 0.53 -0.5 4,793,799 + Psyr_4025 0.53 +1.3 4,793,800 - Psyr_4025 0.53 +0.7 4,793,800 - Psyr_4025 0.53 -1.0 4,793,800 - Psyr_4025 0.53 +1.2 4,794,019 - Psyr_4025 0.74 +0.1 4,794,019 - Psyr_4025 0.74 +2.9 4,794,410 + +0.6 4,794,992 + Psyr_4026 0.51 +0.6 4,794,992 + Psyr_4026 0.51 +0.3 4,795,112 + Psyr_4026 0.60 +0.6 4,795,112 + Psyr_4026 0.60 +1.0 4,795,112 + Psyr_4026 0.60 +0.7 4,795,112 + Psyr_4026 0.60 +0.0 4,795,112 + Psyr_4026 0.60 +0.8 4,795,112 + Psyr_4026 0.60 -1.7 4,795,112 + Psyr_4026 0.60 +0.7 4,795,112 + Psyr_4026 0.60 -0.5 4,795,113 - Psyr_4026 0.60 +0.4 4,795,113 - Psyr_4026 0.60 +0.4 4,795,113 - Psyr_4026 0.60 +0.3 4,795,113 - Psyr_4026 0.60 +0.4 4,795,113 - Psyr_4026 0.60 +1.3 4,795,175 + Psyr_4026 0.65 +0.3 4,795,176 - Psyr_4026 0.65 -0.1 4,795,229 + Psyr_4026 0.69 -0.2 4,795,229 + Psyr_4026 0.69 -1.1 4,795,230 - Psyr_4026 0.69 +1.1 4,795,230 - Psyr_4026 0.69 -0.2 4,795,422 + Psyr_4026 0.84 -0.3 4,795,422 + Psyr_4026 0.84 +0.6 4,795,423 - Psyr_4026 0.84 -0.2 4,795,457 + Psyr_4026 0.87 +0.1 4,795,457 + Psyr_4026 0.87 -0.5 4,795,458 - Psyr_4026 0.87 -0.4 4,795,458 - Psyr_4026 0.87 -0.1 4,795,458 - Psyr_4026 0.87 +1.1 4,795,458 - Psyr_4026 0.87 +0.6 4,795,476 - Psyr_4026 0.88 -0.0 4,795,476 - Psyr_4026 0.88 +0.9 4,795,595 + +0.4 4,795,595 + +0.9 4,795,596 - +0.4 4,795,624 - +0.1 4,795,672 + -0.3 4,795,693 + Psyr_4027 0.10 +0.6 4,795,693 + Psyr_4027 0.10 -0.4 4,795,693 + Psyr_4027 0.10 -0.7 4,795,693 + Psyr_4027 0.10 +0.0 4,795,693 + Psyr_4027 0.10 +0.9 4,795,694 - Psyr_4027 0.11 +2.1 4,795,694 - Psyr_4027 0.11 -0.1 4,795,694 - Psyr_4027 0.11 +1.1 4,795,694 - Psyr_4027 0.11 +0.9 4,795,694 - Psyr_4027 0.11 -0.1 4,795,694 - Psyr_4027 0.11 -2.0 4,795,694 - Psyr_4027 0.11 +0.2 4,795,694 - Psyr_4027 0.11 +0.6 4,795,723 + Psyr_4027 0.19 +0.9 4,795,723 + Psyr_4027 0.19 +1.2 4,795,724 - Psyr_4027 0.19 -1.0 4,795,762 + Psyr_4027 0.29 +0.2 4,795,762 + Psyr_4027 0.29 +1.4 4,795,762 + Psyr_4027 0.29 -0.6 4,795,762 + Psyr_4027 0.29 -0.7 4,795,763 - Psyr_4027 0.30 +0.5 4,795,763 - Psyr_4027 0.30 -0.4 4,795,895 + Psyr_4027 0.66 -0.3 4,795,896 - Psyr_4027 0.67 -0.3 4,795,972 + Psyr_4027 0.88 +0.2 4,795,972 + Psyr_4027 0.88 -0.3 4,796,009 + -0.1 4,796,009 + -0.2 4,796,010 - +0.2 4,796,010 - +1.8 4,796,010 - +1.4 4,796,011 + +1.7 4,796,011 + -3.1 4,796,011 + +0.1 4,796,011 + -0.5 4,796,011 + -1.8 4,796,011 + +0.8 4,796,011 + +0.1 4,796,011 + +1.2 4,796,011 + +0.8 4,796,011 + -0.1 4,796,011 + -0.2 4,796,012 - +1.2 4,796,012 - -0.5 4,796,012 - -0.8 4,796,012 - +1.1 4,796,012 - -1.7 4,796,012 - -1.5 4,796,012 - -0.2 4,796,012 - -0.8 4,796,012 - +0.5 4,796,012 - -0.2 4,796,012 - +1.9 4,796,012 - +1.1 4,796,012 - +0.1 4,796,012 - +0.2 4,796,012 - -0.4 4,796,012 - +0.0 4,796,012 - -0.6 4,796,012 - +0.2 4,796,082 + -1.1 4,796,160 + +0.1 4,796,161 - -0.4 4,796,161 - -0.6 4,796,171 + +0.7 4,796,172 - -1.0 4,796,217 - -0.6 4,796,220 + -3.6 4,796,220 + -2.6 4,796,220 + -0.0 4,796,220 + +0.4 4,796,220 + -1.6 4,796,221 - -0.2 4,796,249 + -0.7 4,796,249 + +0.6 4,796,249 + +1.0 4,796,250 - +0.7 4,796,335 - Psyr_4028 0.29 +0.5 4,796,370 + Psyr_4028 0.38 +2.1 4,796,391 + Psyr_4028 0.43 +1.0 4,796,391 + Psyr_4028 0.43 +0.3 4,796,588 + +1.4 4,796,589 - +0.8 4,796,591 + -0.4 4,796,591 + +0.3 4,796,591 + -0.9 4,796,591 + -0.8 4,796,592 - +0.9 4,796,592 - -0.1 4,796,592 - -0.4 4,796,603 + -1.0 4,796,608 + -0.6 4,796,608 + +0.0
Or see this region's nucleotide sequence