Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3788

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3787 and Psyr_3788 are separated by 144 nucleotidesPsyr_3788 and Psyr_3789 are separated by 69 nucleotides Psyr_3787: Psyr_3787 - conserved hypothetical protein, at 4,503,341 to 4,503,907 _3787 Psyr_3788: Psyr_3788 - Conserved hypothetical protein 2001, at 4,504,052 to 4,504,780 _3788 Psyr_3789: Psyr_3789 - lipoprotein, putative, at 4,504,850 to 4,505,713 _3789 Position (kb) 4504 4505Strain fitness (log2 ratio) -1 0 1 2at 4503.319 kb on + strandat 4503.319 kb on + strandat 4503.320 kb on - strandat 4503.320 kb on - strandat 4503.334 kb on + strandat 4503.335 kb on - strandat 4503.340 kb on + strandat 4503.341 kb on - strandat 4503.372 kb on + strandat 4503.373 kb on - strandat 4503.373 kb on - strandat 4503.428 kb on + strand, within Psyr_3787at 4503.428 kb on + strand, within Psyr_3787at 4503.518 kb on + strand, within Psyr_3787at 4503.575 kb on + strand, within Psyr_3787at 4503.641 kb on + strand, within Psyr_3787at 4503.651 kb on + strand, within Psyr_3787at 4503.651 kb on + strand, within Psyr_3787at 4503.651 kb on + strand, within Psyr_3787at 4503.651 kb on + strand, within Psyr_3787at 4503.970 kb on + strandat 4504.068 kb on + strandat 4504.069 kb on - strandat 4504.069 kb on - strandat 4504.262 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.325 kb on + strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.326 kb on - strand, within Psyr_3788at 4504.391 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.427 kb on + strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.428 kb on - strand, within Psyr_3788at 4504.504 kb on - strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.676 kb on + strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.677 kb on - strand, within Psyr_3788at 4504.716 kb on - strandat 4504.757 kb on - strandat 4504.757 kb on - strandat 4504.778 kb on + strandat 4504.811 kb on - strandat 4504.820 kb on + strandat 4504.821 kb on - strandat 4504.834 kb on - strandat 4504.920 kb on + strandat 4504.921 kb on - strandat 4504.921 kb on - strandat 4504.973 kb on + strand, within Psyr_3789at 4504.973 kb on + strand, within Psyr_3789at 4505.064 kb on - strand, within Psyr_3789at 4505.117 kb on + strand, within Psyr_3789at 4505.118 kb on - strand, within Psyr_3789at 4505.118 kb on - strand, within Psyr_3789at 4505.118 kb on - strand, within Psyr_3789at 4505.118 kb on - strand, within Psyr_3789at 4505.118 kb on - strand, within Psyr_3789at 4505.119 kb on - strand, within Psyr_3789at 4505.138 kb on - strand, within Psyr_3789at 4505.197 kb on - strand, within Psyr_3789at 4505.282 kb on + strand, within Psyr_3789at 4505.282 kb on + strand, within Psyr_3789at 4505.282 kb on + strand, within Psyr_3789at 4505.283 kb on - strand, within Psyr_3789at 4505.443 kb on + strand, within Psyr_3789at 4505.711 kb on + strandat 4505.711 kb on + strandat 4505.711 kb on + strandat 4505.712 kb on - strandat 4505.712 kb on - strandat 4505.712 kb on - strandat 4505.719 kb on + strandat 4505.737 kb on + strandat 4505.737 kb on + strandat 4505.737 kb on + strandat 4505.738 kb on - strandat 4505.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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4,503,319 + +0.9
4,503,319 + +0.5
4,503,320 - -0.4
4,503,320 - +1.1
4,503,334 + -1.4
4,503,335 - +1.1
4,503,340 + -0.2
4,503,341 - +0.1
4,503,372 + -0.7
4,503,373 - -0.8
4,503,373 - +2.5
4,503,428 + Psyr_3787 0.15 +0.3
4,503,428 + Psyr_3787 0.15 +0.9
4,503,518 + Psyr_3787 0.31 -1.5
4,503,575 + Psyr_3787 0.41 -0.3
4,503,641 + Psyr_3787 0.53 +0.3
4,503,651 + Psyr_3787 0.55 -0.2
4,503,651 + Psyr_3787 0.55 -1.2
4,503,651 + Psyr_3787 0.55 +0.2
4,503,651 + Psyr_3787 0.55 +0.3
4,503,970 + -0.0
4,504,068 + +0.6
4,504,069 - +0.5
4,504,069 - +0.8
4,504,262 + Psyr_3788 0.29 +1.5
4,504,325 + Psyr_3788 0.37 -0.5
4,504,325 + Psyr_3788 0.37 -1.0
4,504,325 + Psyr_3788 0.37 +0.2
4,504,325 + Psyr_3788 0.37 +0.2
4,504,325 + Psyr_3788 0.37 -0.2
4,504,326 - Psyr_3788 0.38 -0.8
4,504,326 - Psyr_3788 0.38 -0.0
4,504,326 - Psyr_3788 0.38 -0.9
4,504,326 - Psyr_3788 0.38 +0.3
4,504,326 - Psyr_3788 0.38 +0.8
4,504,326 - Psyr_3788 0.38 -0.6
4,504,326 - Psyr_3788 0.38 -0.5
4,504,391 + Psyr_3788 0.47 -1.3
4,504,427 + Psyr_3788 0.51 -0.8
4,504,427 + Psyr_3788 0.51 -0.3
4,504,427 + Psyr_3788 0.51 -1.0
4,504,428 - Psyr_3788 0.52 +1.2
4,504,428 - Psyr_3788 0.52 -0.0
4,504,428 - Psyr_3788 0.52 -1.5
4,504,428 - Psyr_3788 0.52 +0.2
4,504,504 - Psyr_3788 0.62 +0.5
4,504,676 + Psyr_3788 0.86 -0.2
4,504,676 + Psyr_3788 0.86 +0.2
4,504,676 + Psyr_3788 0.86 -0.9
4,504,676 + Psyr_3788 0.86 +0.1
4,504,676 + Psyr_3788 0.86 -0.7
4,504,676 + Psyr_3788 0.86 -0.3
4,504,676 + Psyr_3788 0.86 -0.4
4,504,677 - Psyr_3788 0.86 -0.0
4,504,677 - Psyr_3788 0.86 +0.7
4,504,677 - Psyr_3788 0.86 -1.4
4,504,677 - Psyr_3788 0.86 +0.5
4,504,677 - Psyr_3788 0.86 -0.3
4,504,716 - +0.0
4,504,757 - +1.0
4,504,757 - -0.0
4,504,778 + -0.6
4,504,811 - -0.8
4,504,820 + -0.3
4,504,821 - -0.7
4,504,834 - -0.2
4,504,920 + +1.0
4,504,921 - +0.8
4,504,921 - +0.4
4,504,973 + Psyr_3789 0.14 -0.0
4,504,973 + Psyr_3789 0.14 +1.3
4,505,064 - Psyr_3789 0.25 -0.1
4,505,117 + Psyr_3789 0.31 -0.0
4,505,118 - Psyr_3789 0.31 +0.7
4,505,118 - Psyr_3789 0.31 +0.3
4,505,118 - Psyr_3789 0.31 -0.3
4,505,118 - Psyr_3789 0.31 +0.5
4,505,118 - Psyr_3789 0.31 -0.5
4,505,119 - Psyr_3789 0.31 -0.7
4,505,138 - Psyr_3789 0.33 +1.1
4,505,197 - Psyr_3789 0.40 +0.2
4,505,282 + Psyr_3789 0.50 +1.1
4,505,282 + Psyr_3789 0.50 +0.9
4,505,282 + Psyr_3789 0.50 +0.9
4,505,283 - Psyr_3789 0.50 +1.0
4,505,443 + Psyr_3789 0.69 +1.2
4,505,711 + +0.7
4,505,711 + +0.6
4,505,711 + +0.1
4,505,712 - -0.1
4,505,712 - +1.1
4,505,712 - +0.7
4,505,719 + -0.1
4,505,737 + +0.9
4,505,737 + +0.7
4,505,737 + -0.7
4,505,738 - +1.8
4,505,761 + -0.1

Or see this region's nucleotide sequence