Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1028

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1027 and Psyr_1028 are separated by 81 nucleotidesPsyr_1028 and Psyr_1029 are separated by 31 nucleotides Psyr_1027: Psyr_1027 - conserved hypothetical protein, at 1,157,518 to 1,158,321 _1027 Psyr_1028: Psyr_1028 - conserved hypothetical protein, at 1,158,403 to 1,159,275 _1028 Psyr_1029: Psyr_1029 - Peptidase aspartic, active site, at 1,159,307 to 1,161,271 _1029 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -2 -1 0 1 2at 1157.489 kb on + strandat 1157.651 kb on + strand, within Psyr_1027at 1157.652 kb on - strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.815 kb on - strand, within Psyr_1027at 1158.176 kb on - strand, within Psyr_1027at 1158.366 kb on - strandat 1158.366 kb on - strandat 1158.404 kb on + strandat 1158.404 kb on + strandat 1158.404 kb on + strandat 1158.405 kb on - strandat 1158.405 kb on - strandat 1158.405 kb on - strandat 1158.422 kb on - strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.441 kb on - strandat 1158.441 kb on - strandat 1158.441 kb on - strandat 1158.441 kb on - strandat 1158.461 kb on + strandat 1158.462 kb on - strandat 1158.462 kb on - strandat 1158.608 kb on + strand, within Psyr_1028at 1158.608 kb on + strand, within Psyr_1028at 1158.609 kb on - strand, within Psyr_1028at 1158.609 kb on - strand, within Psyr_1028at 1158.609 kb on - strand, within Psyr_1028at 1158.609 kb on - strand, within Psyr_1028at 1158.609 kb on - strand, within Psyr_1028at 1158.638 kb on + strand, within Psyr_1028at 1158.831 kb on - strand, within Psyr_1028at 1158.831 kb on - strand, within Psyr_1028at 1159.102 kb on + strand, within Psyr_1028at 1159.102 kb on + strand, within Psyr_1028at 1159.103 kb on - strand, within Psyr_1028at 1159.109 kb on - strand, within Psyr_1028at 1159.175 kb on + strand, within Psyr_1028at 1159.175 kb on + strand, within Psyr_1028at 1159.280 kb on + strandat 1159.280 kb on + strandat 1159.281 kb on - strandat 1159.281 kb on - strandat 1159.395 kb on + strandat 1159.395 kb on + strandat 1159.395 kb on + strandat 1159.395 kb on + strandat 1159.395 kb on + strandat 1159.395 kb on + strandat 1159.396 kb on - strandat 1159.396 kb on - strandat 1159.396 kb on - strandat 1159.396 kb on - strandat 1159.396 kb on - strandat 1159.396 kb on - strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.417 kb on + strandat 1159.417 kb on + strandat 1159.418 kb on - strandat 1159.418 kb on - strandat 1159.418 kb on - strandat 1159.471 kb on + strandat 1159.647 kb on + strand, within Psyr_1029at 1159.665 kb on + strand, within Psyr_1029at 1159.665 kb on + strand, within Psyr_1029at 1159.665 kb on + strand, within Psyr_1029at 1159.665 kb on + strand, within Psyr_1029at 1159.665 kb on + strand, within Psyr_1029at 1159.666 kb on - strand, within Psyr_1029at 1159.692 kb on - strand, within Psyr_1029at 1160.041 kb on - strand, within Psyr_1029at 1160.146 kb on - strand, within Psyr_1029at 1160.167 kb on - strand, within Psyr_1029at 1160.270 kb on - strand, within Psyr_1029

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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1,157,489 + +0.4
1,157,651 + Psyr_1027 0.17 -2.5
1,157,652 - Psyr_1027 0.17 +0.7
1,157,814 + Psyr_1027 0.37 -0.3
1,157,814 + Psyr_1027 0.37 +0.6
1,157,814 + Psyr_1027 0.37 -1.2
1,157,814 + Psyr_1027 0.37 +2.6
1,157,814 + Psyr_1027 0.37 -0.9
1,157,814 + Psyr_1027 0.37 -0.5
1,157,814 + Psyr_1027 0.37 -1.0
1,157,814 + Psyr_1027 0.37 +0.5
1,157,814 + Psyr_1027 0.37 -1.0
1,157,814 + Psyr_1027 0.37 +0.6
1,157,814 + Psyr_1027 0.37 +0.4
1,157,814 + Psyr_1027 0.37 -1.2
1,157,815 - Psyr_1027 0.37 +1.6
1,158,176 - Psyr_1027 0.82 -1.6
1,158,366 - -0.2
1,158,366 - -0.2
1,158,404 + +0.0
1,158,404 + -0.3
1,158,404 + -0.1
1,158,405 - -0.7
1,158,405 - -0.4
1,158,405 - +0.1
1,158,422 - -0.0
1,158,440 + -1.0
1,158,440 + +1.3
1,158,440 + -0.8
1,158,440 + -1.4
1,158,440 + -1.0
1,158,440 + +1.0
1,158,440 + +0.5
1,158,440 + +1.2
1,158,441 - +0.2
1,158,441 - -0.5
1,158,441 - -1.5
1,158,441 - +0.5
1,158,461 + +0.6
1,158,462 - +0.1
1,158,462 - -0.7
1,158,608 + Psyr_1028 0.23 -0.4
1,158,608 + Psyr_1028 0.23 -0.4
1,158,609 - Psyr_1028 0.24 +0.2
1,158,609 - Psyr_1028 0.24 -0.2
1,158,609 - Psyr_1028 0.24 -0.0
1,158,609 - Psyr_1028 0.24 -1.2
1,158,609 - Psyr_1028 0.24 -0.2
1,158,638 + Psyr_1028 0.27 +0.4
1,158,831 - Psyr_1028 0.49 -0.3
1,158,831 - Psyr_1028 0.49 +0.0
1,159,102 + Psyr_1028 0.80 +0.6
1,159,102 + Psyr_1028 0.80 +0.7
1,159,103 - Psyr_1028 0.80 +0.3
1,159,109 - Psyr_1028 0.81 -0.8
1,159,175 + Psyr_1028 0.88 -0.8
1,159,175 + Psyr_1028 0.88 -1.0
1,159,280 + -0.4
1,159,280 + -0.2
1,159,281 - -1.0
1,159,281 - +1.6
1,159,395 + +0.9
1,159,395 + -0.7
1,159,395 + -0.8
1,159,395 + -1.9
1,159,395 + -2.7
1,159,395 + -0.3
1,159,396 - +1.0
1,159,396 - -0.5
1,159,396 - -0.1
1,159,396 - -1.2
1,159,396 - -0.6
1,159,396 - +0.3
1,159,413 + -0.3
1,159,413 + -0.1
1,159,413 + -0.7
1,159,413 + -0.4
1,159,413 + -0.8
1,159,413 + -0.7
1,159,413 + +0.1
1,159,413 + +0.0
1,159,414 - +1.0
1,159,414 - +0.7
1,159,414 - +0.1
1,159,414 - -0.3
1,159,414 - -0.3
1,159,414 - -1.2
1,159,414 - +0.9
1,159,417 + +0.6
1,159,417 + +1.0
1,159,418 - +0.3
1,159,418 - -1.1
1,159,418 - -0.1
1,159,471 + +0.0
1,159,647 + Psyr_1029 0.17 -0.1
1,159,665 + Psyr_1029 0.18 -1.4
1,159,665 + Psyr_1029 0.18 -0.5
1,159,665 + Psyr_1029 0.18 -0.4
1,159,665 + Psyr_1029 0.18 +1.2
1,159,665 + Psyr_1029 0.18 +0.5
1,159,666 - Psyr_1029 0.18 -0.0
1,159,692 - Psyr_1029 0.20 +0.0
1,160,041 - Psyr_1029 0.37 -0.3
1,160,146 - Psyr_1029 0.43 +0.0
1,160,167 - Psyr_1029 0.44 -0.3
1,160,270 - Psyr_1029 0.49 -0.1

Or see this region's nucleotide sequence