Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0809

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0807 and Psyr_0808 are separated by 46 nucleotidesPsyr_0808 and Psyr_0809 overlap by 4 nucleotidesPsyr_0809 and Psyr_0810 are separated by 51 nucleotidesPsyr_0810 and Psyr_0811 are separated by 26 nucleotides Psyr_0807: Psyr_0807 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 912,869 to 913,615 _0807 Psyr_0808: Psyr_0808 - stress protein, at 913,662 to 914,255 _0808 Psyr_0809: Psyr_0809 - stress protein, at 914,252 to 915,421 _0809 Psyr_0810: Psyr_0810 - Tellurite resistance TerB, at 915,473 to 915,922 _0810 Psyr_0811: Psyr_0811 - Integral membrane protein TerC, at 915,949 to 916,983 _0811 Position (kb) 914 915 916Strain fitness (log2 ratio) -2 -1 0 1 2 3at 913.288 kb on + strand, within Psyr_0807at 913.555 kb on + strandat 913.555 kb on + strandat 913.578 kb on + strandat 913.716 kb on - strandat 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 914.056 kb on - strand, within Psyr_0808at 914.064 kb on - strand, within Psyr_0808at 914.146 kb on - strand, within Psyr_0808at 914.243 kb on + strandat 914.244 kb on - strandat 914.246 kb on - strandat 914.251 kb on + strandat 914.251 kb on + strandat 914.252 kb on - strandat 914.314 kb on + strandat 914.315 kb on - strandat 914.318 kb on + strandat 914.318 kb on + strandat 914.319 kb on - strandat 914.343 kb on + strandat 914.344 kb on - strandat 914.408 kb on + strand, within Psyr_0809at 914.409 kb on - strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.947 kb on + strand, within Psyr_0809at 914.947 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 915.092 kb on - strand, within Psyr_0809at 915.124 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.384 kb on - strandat 915.419 kb on + strandat 915.419 kb on + strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.427 kb on - strandat 915.434 kb on + strandat 915.435 kb on - strandat 915.435 kb on - strandat 915.435 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.933 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.947 kb on - strandat 915.965 kb on + strandat 915.965 kb on + strandat 915.965 kb on + strandat 916.129 kb on + strand, within Psyr_0811at 916.129 kb on + strand, within Psyr_0811at 916.129 kb on + strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.175 kb on - strand, within Psyr_0811at 916.281 kb on + strand, within Psyr_0811at 916.282 kb on - strand, within Psyr_0811at 916.361 kb on + strand, within Psyr_0811at 916.361 kb on + strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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913,288 + Psyr_0807 0.56 -1.2
913,555 + -0.5
913,555 + +0.5
913,578 + -0.8
913,716 - +1.2
913,995 + Psyr_0808 0.56 +1.5
913,995 + Psyr_0808 0.56 -0.1
913,995 + Psyr_0808 0.56 -0.2
913,995 + Psyr_0808 0.56 +0.8
913,996 - Psyr_0808 0.56 -0.8
914,056 - Psyr_0808 0.66 +0.6
914,064 - Psyr_0808 0.68 -0.6
914,146 - Psyr_0808 0.81 -0.5
914,243 + +0.5
914,244 - +1.1
914,246 - +1.5
914,251 + +1.3
914,251 + -1.0
914,252 - -0.6
914,314 + -1.5
914,315 - +1.7
914,318 + +3.3
914,318 + +0.4
914,319 - +0.5
914,343 + +0.4
914,344 - +0.0
914,408 + Psyr_0809 0.13 -0.3
914,409 - Psyr_0809 0.13 +0.3
914,537 + Psyr_0809 0.24 -0.1
914,537 + Psyr_0809 0.24 -0.2
914,537 + Psyr_0809 0.24 -0.2
914,537 + Psyr_0809 0.24 +0.4
914,537 + Psyr_0809 0.24 +0.4
914,537 + Psyr_0809 0.24 +0.2
914,537 + Psyr_0809 0.24 +0.7
914,538 - Psyr_0809 0.24 +1.1
914,538 - Psyr_0809 0.24 -0.0
914,538 - Psyr_0809 0.24 -0.3
914,538 - Psyr_0809 0.24 +0.1
914,538 - Psyr_0809 0.24 +0.7
914,538 - Psyr_0809 0.24 +1.8
914,538 - Psyr_0809 0.24 +0.0
914,538 - Psyr_0809 0.24 -0.8
914,538 - Psyr_0809 0.24 -1.1
914,538 - Psyr_0809 0.24 +0.7
914,658 - Psyr_0809 0.35 -1.5
914,658 - Psyr_0809 0.35 +2.2
914,658 - Psyr_0809 0.35 -0.8
914,658 - Psyr_0809 0.35 -0.6
914,658 - Psyr_0809 0.35 -0.6
914,658 - Psyr_0809 0.35 +0.5
914,658 - Psyr_0809 0.35 -1.2
914,947 + Psyr_0809 0.59 -0.3
914,947 + Psyr_0809 0.59 -0.0
914,959 + Psyr_0809 0.60 +2.3
914,960 - Psyr_0809 0.61 +1.0
914,960 - Psyr_0809 0.61 +0.2
914,979 + Psyr_0809 0.62 -0.2
914,979 + Psyr_0809 0.62 -0.1
914,979 + Psyr_0809 0.62 +1.9
914,979 + Psyr_0809 0.62 -0.5
914,979 + Psyr_0809 0.62 -0.1
914,980 - Psyr_0809 0.62 +0.5
914,980 - Psyr_0809 0.62 -1.1
914,980 - Psyr_0809 0.62 -0.5
914,980 - Psyr_0809 0.62 -0.7
915,092 - Psyr_0809 0.72 -0.3
915,124 + Psyr_0809 0.75 +0.2
915,179 + Psyr_0809 0.79 -2.6
915,179 + Psyr_0809 0.79 -0.8
915,179 + Psyr_0809 0.79 +0.4
915,179 + Psyr_0809 0.79 -0.8
915,179 + Psyr_0809 0.79 +0.8
915,179 + Psyr_0809 0.79 +1.5
915,179 + Psyr_0809 0.79 -1.1
915,180 - Psyr_0809 0.79 +0.0
915,180 - Psyr_0809 0.79 -1.6
915,180 - Psyr_0809 0.79 -0.3
915,180 - Psyr_0809 0.79 +0.0
915,180 - Psyr_0809 0.79 -0.2
915,180 - Psyr_0809 0.79 -2.0
915,180 - Psyr_0809 0.79 +0.2
915,180 - Psyr_0809 0.79 +0.1
915,180 - Psyr_0809 0.79 -0.3
915,180 - Psyr_0809 0.79 -0.5
915,180 - Psyr_0809 0.79 -0.3
915,180 - Psyr_0809 0.79 +0.7
915,180 - Psyr_0809 0.79 +0.3
915,180 - Psyr_0809 0.79 -0.7
915,180 - Psyr_0809 0.79 -0.7
915,180 - Psyr_0809 0.79 -1.8
915,180 - Psyr_0809 0.79 -1.2
915,180 - Psyr_0809 0.79 -0.2
915,384 - +0.1
915,419 + +0.3
915,419 + -0.8
915,420 - +0.6
915,420 - -0.2
915,427 - -0.2
915,434 + +0.3
915,435 - +1.8
915,435 - -1.3
915,435 - +0.5
915,469 - +1.5
915,469 - +0.0
915,469 - +0.6
915,933 + +1.3
915,946 + +0.1
915,946 + -0.0
915,946 + -0.7
915,946 + +0.1
915,946 + +0.0
915,947 - -1.5
915,965 + -0.1
915,965 + +2.2
915,965 + +0.9
916,129 + Psyr_0811 0.17 +0.1
916,129 + Psyr_0811 0.17 +0.2
916,129 + Psyr_0811 0.17 +0.6
916,130 - Psyr_0811 0.17 +0.3
916,130 - Psyr_0811 0.17 +0.5
916,130 - Psyr_0811 0.17 -0.1
916,130 - Psyr_0811 0.17 +0.3
916,175 - Psyr_0811 0.22 -0.5
916,281 + Psyr_0811 0.32 +0.1
916,282 - Psyr_0811 0.32 -0.5
916,361 + Psyr_0811 0.40 -1.2
916,361 + Psyr_0811 0.40 -1.8
916,362 - Psyr_0811 0.40 -0.1
916,364 + Psyr_0811 0.40 +0.8
916,364 + Psyr_0811 0.40 -0.5
916,364 + Psyr_0811 0.40 -1.1
916,364 + Psyr_0811 0.40 -1.7
916,364 + Psyr_0811 0.40 +0.5
916,365 - Psyr_0811 0.40 +0.2
916,365 - Psyr_0811 0.40 +0.5

Or see this region's nucleotide sequence