Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0453

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0451 and Psyr_0452 are separated by 122 nucleotidesPsyr_0452 and Psyr_0453 are separated by 106 nucleotidesPsyr_0453 and Psyr_0454 are separated by 131 nucleotides Psyr_0451: Psyr_0451 - regulatory protein, LysR:LysR, substrate-binding protein, at 486,927 to 487,853 _0451 Psyr_0452: Psyr_0452 - HylII, at 487,976 to 488,590 _0452 Psyr_0453: Psyr_0453 - 16S rRNA m(3)U-1498 methyltransferase, at 488,697 to 489,416 _0453 Psyr_0454: Psyr_0454 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme, at 489,548 to 490,954 _0454 Position (kb) 488 489 490Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 487.813 kb on - strandat 487.894 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.947 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.979 kb on + strandat 487.980 kb on - strandat 487.980 kb on - strandat 487.980 kb on - strandat 487.980 kb on - strandat 487.980 kb on - strandat 487.983 kb on - strandat 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.108 kb on + strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.109 kb on - strand, within Psyr_0452at 488.132 kb on + strand, within Psyr_0452at 488.133 kb on - strand, within Psyr_0452at 488.150 kb on + strand, within Psyr_0452at 488.151 kb on - strand, within Psyr_0452at 488.210 kb on + strand, within Psyr_0452at 488.210 kb on + strand, within Psyr_0452at 488.211 kb on - strand, within Psyr_0452at 488.211 kb on - strand, within Psyr_0452at 488.232 kb on - strand, within Psyr_0452at 488.232 kb on - strand, within Psyr_0452at 488.328 kb on + strand, within Psyr_0452at 488.328 kb on + strand, within Psyr_0452at 488.328 kb on + strand, within Psyr_0452at 488.329 kb on - strand, within Psyr_0452at 488.469 kb on - strand, within Psyr_0452at 488.469 kb on - strand, within Psyr_0452at 488.469 kb on - strand, within Psyr_0452at 488.579 kb on + strandat 488.579 kb on + strandat 488.580 kb on - strandat 488.622 kb on + strandat 488.622 kb on + strandat 488.622 kb on + strandat 488.622 kb on + strandat 488.622 kb on + strandat 488.623 kb on - strandat 488.623 kb on - strandat 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.678 kb on + strandat 489.693 kb on + strand, within Psyr_0454at 489.694 kb on - strand, within Psyr_0454at 489.694 kb on - strand, within Psyr_0454at 489.694 kb on - strand, within Psyr_0454at 489.991 kb on - strand, within Psyr_0454at 489.991 kb on - strand, within Psyr_0454at 490.026 kb on + strand, within Psyr_0454at 490.035 kb on + strand, within Psyr_0454at 490.036 kb on - strand, within Psyr_0454at 490.047 kb on + strand, within Psyr_0454at 490.048 kb on - strand, within Psyr_0454at 490.245 kb on + strand, within Psyr_0454at 490.257 kb on + strand, within Psyr_0454at 490.257 kb on + strand, within Psyr_0454at 490.257 kb on + strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
remove
487,813 - +0.9
487,894 + +0.7
487,904 + +0.3
487,904 + +0.8
487,904 + +0.0
487,904 + +0.5
487,904 + -0.8
487,905 - +0.5
487,905 - +0.2
487,905 - -2.8
487,905 - +1.2
487,905 - -0.7
487,905 - -1.4
487,905 - +0.2
487,905 - -0.8
487,905 - +0.3
487,905 - +0.5
487,905 - +1.0
487,947 + +0.3
487,979 + -0.3
487,979 + +0.4
487,979 + -0.1
487,979 + +1.2
487,979 + +0.4
487,980 - -0.2
487,980 - +0.8
487,980 - -1.3
487,980 - +0.7
487,980 - +0.1
487,983 - -0.1
488,108 + Psyr_0452 0.21 +2.1
488,108 + Psyr_0452 0.21 -1.0
488,108 + Psyr_0452 0.21 -0.3
488,108 + Psyr_0452 0.21 -1.9
488,108 + Psyr_0452 0.21 +0.0
488,108 + Psyr_0452 0.21 +0.0
488,108 + Psyr_0452 0.21 -1.2
488,108 + Psyr_0452 0.21 -0.5
488,108 + Psyr_0452 0.21 -0.3
488,108 + Psyr_0452 0.21 +0.5
488,108 + Psyr_0452 0.21 +0.6
488,108 + Psyr_0452 0.21 +1.2
488,108 + Psyr_0452 0.21 +0.7
488,108 + Psyr_0452 0.21 +0.8
488,108 + Psyr_0452 0.21 -0.0
488,109 - Psyr_0452 0.22 -0.4
488,109 - Psyr_0452 0.22 -1.9
488,109 - Psyr_0452 0.22 -1.2
488,109 - Psyr_0452 0.22 +1.6
488,109 - Psyr_0452 0.22 +0.7
488,109 - Psyr_0452 0.22 +1.2
488,109 - Psyr_0452 0.22 -1.0
488,109 - Psyr_0452 0.22 -0.1
488,109 - Psyr_0452 0.22 +0.0
488,109 - Psyr_0452 0.22 +0.1
488,109 - Psyr_0452 0.22 +1.0
488,109 - Psyr_0452 0.22 -0.1
488,109 - Psyr_0452 0.22 +0.2
488,132 + Psyr_0452 0.25 +0.0
488,133 - Psyr_0452 0.26 +0.2
488,150 + Psyr_0452 0.28 -0.4
488,151 - Psyr_0452 0.28 +0.0
488,210 + Psyr_0452 0.38 +0.1
488,210 + Psyr_0452 0.38 -0.1
488,211 - Psyr_0452 0.38 +1.0
488,211 - Psyr_0452 0.38 +0.4
488,232 - Psyr_0452 0.42 +2.5
488,232 - Psyr_0452 0.42 -0.1
488,328 + Psyr_0452 0.57 +1.3
488,328 + Psyr_0452 0.57 -0.2
488,328 + Psyr_0452 0.57 -0.0
488,329 - Psyr_0452 0.57 -0.5
488,469 - Psyr_0452 0.80 -0.8
488,469 - Psyr_0452 0.80 +0.2
488,469 - Psyr_0452 0.80 +1.0
488,579 + +1.0
488,579 + +0.9
488,580 - -0.4
488,622 + -0.2
488,622 + -0.2
488,622 + +0.9
488,622 + -0.3
488,622 + -0.1
488,623 - +1.3
488,623 - -0.1
489,340 + Psyr_0453 0.89 +0.3
489,340 + Psyr_0453 0.89 -0.0
489,340 + Psyr_0453 0.89 +1.3
489,340 + Psyr_0453 0.89 +0.2
489,340 + Psyr_0453 0.89 -0.9
489,340 + Psyr_0453 0.89 +0.1
489,340 + Psyr_0453 0.89 +0.4
489,340 + Psyr_0453 0.89 -0.5
489,340 + Psyr_0453 0.89 -0.4
489,341 - Psyr_0453 0.89 -0.0
489,341 - Psyr_0453 0.89 +0.9
489,341 - Psyr_0453 0.89 +0.2
489,678 + -2.5
489,693 + Psyr_0454 0.10 -1.9
489,694 - Psyr_0454 0.10 +0.7
489,694 - Psyr_0454 0.10 -1.7
489,694 - Psyr_0454 0.10 -1.9
489,991 - Psyr_0454 0.31 -2.4
489,991 - Psyr_0454 0.31 -1.8
490,026 + Psyr_0454 0.34 -1.7
490,035 + Psyr_0454 0.35 -3.1
490,036 - Psyr_0454 0.35 -0.8
490,047 + Psyr_0454 0.35 -1.7
490,048 - Psyr_0454 0.36 -1.7
490,245 + Psyr_0454 0.50 -1.9
490,257 + Psyr_0454 0.50 -1.9
490,257 + Psyr_0454 0.50 -2.5
490,257 + Psyr_0454 0.50 -3.8
490,258 - Psyr_0454 0.50 -2.8
490,258 - Psyr_0454 0.50 -2.2
490,258 - Psyr_0454 0.50 -1.7

Or see this region's nucleotide sequence