Strain Fitness in Escherichia coli BW25113 around b3447

Experiment: 3-methyl-2-butenol 1.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-2-butenol 1.25 vol%
3,582,474	+	yrhD	b4612	0.30	-0.6
3,582,796	-				+0.3
3,582,796	-				-1.2
3,582,809	+				-0.1
3,582,831	-	yrhB	b3446	0.17	-0.6
3,582,855	-	yrhB	b3446	0.26	+1.1
3,582,857	-	yrhB	b3446	0.26	-0.4
3,582,860	-	yrhB	b3446	0.27	-0.1
3,582,862	-	yrhB	b3446	0.28	-0.8
3,582,862	-	yrhB	b3446	0.28	-0.5
3,582,862	-	yrhB	b3446	0.28	+0.5
3,582,863	-	yrhB	b3446	0.28	+1.4
3,582,863	-	yrhB	b3446	0.28	+0.1
3,582,867	+	yrhB	b3446	0.30	-0.1
3,582,867	+	yrhB	b3446	0.30	-0.2
3,582,867	+	yrhB	b3446	0.30	+0.5
3,582,867	-	yrhB	b3446	0.30	+0.8
3,582,867	-	yrhB	b3446	0.30	-0.1
3,582,870	-	yrhB	b3446	0.31	-0.2
3,582,870	-	yrhB	b3446	0.31	+0.9
3,582,877	+	yrhB	b3446	0.33	-0.0
3,582,880	-	yrhB	b3446	0.34	+0.8
3,582,880	-	yrhB	b3446	0.34	+0.5
3,582,880	-	yrhB	b3446	0.34	+0.2
3,582,886	+	yrhB	b3446	0.36	-0.5
3,582,926	-	yrhB	b3446	0.51	+0.4
3,582,928	-	yrhB	b3446	0.51	+0.2
3,582,934	+	yrhB	b3446	0.53	-0.3
3,582,937	-	yrhB	b3446	0.54	+0.7
3,582,942	-	yrhB	b3446	0.56	+0.5
3,582,942	-	yrhB	b3446	0.56	+0.1
3,582,942	-	yrhB	b3446	0.56	+0.1
3,583,058	-				+0.3
3,583,058	-				-2.7
3,583,077	-				-1.1
3,583,077	-				-1.3
3,583,079	+				-0.3
3,583,083	-				-0.2
3,583,095	-				+0.6
3,583,102	+				-0.0
3,583,103	-				+0.5
3,583,103	-				+0.8
3,583,103	-				-0.2
3,583,103	-				+0.6
3,583,108	-				-0.4
3,583,108	-				+1.1
3,583,108	-				-1.3
3,583,110	-				+0.9
3,583,110	-				-0.5
3,583,110	-				-1.5
3,583,110	-				-0.1
3,583,112	-				+0.9
3,583,158	-				+0.1
3,583,158	-				-0.6
3,583,160	-				+0.5
3,583,182	+				+0.1
3,583,183	-				-0.1
3,583,183	-				+0.1
3,583,203	-				+0.5
3,583,203	-				+0.7
3,583,250	+				-0.4
3,583,364	-	ggt	b3447	0.15	-0.5
3,583,364	-	ggt	b3447	0.15	+0.4
3,583,406	-	ggt	b3447	0.17	-0.5
3,583,439	-	ggt	b3447	0.19	-0.1
3,583,491	+	ggt	b3447	0.22	+0.9
3,583,501	+	ggt	b3447	0.23	+1.3
3,583,511	+	ggt	b3447	0.23	+1.3
3,583,576	-	ggt	b3447	0.27	-0.0
3,583,619	+	ggt	b3447	0.30	+0.1
3,583,619	+	ggt	b3447	0.30	+1.4
3,583,619	+	ggt	b3447	0.30	+0.9
3,583,619	+	ggt	b3447	0.30	-0.4
3,583,627	-	ggt	b3447	0.30	-0.8
3,583,627	-	ggt	b3447	0.30	-0.8
3,583,629	-	ggt	b3447	0.30	+0.7
3,583,661	-	ggt	b3447	0.32	-0.9
3,583,666	-	ggt	b3447	0.32	+0.1
3,583,666	-	ggt	b3447	0.32	-0.1
3,583,684	+	ggt	b3447	0.33	+1.0
3,583,684	+	ggt	b3447	0.33	+0.6
3,583,717	+	ggt	b3447	0.35	+0.9
3,583,735	-	ggt	b3447	0.36	+0.7
3,583,785	-	ggt	b3447	0.39	+0.1
3,583,791	-	ggt	b3447	0.39	-0.4
3,583,802	+	ggt	b3447	0.40	-0.1
3,583,802	+	ggt	b3447	0.40	+0.2
3,583,826	+	ggt	b3447	0.41	-0.2
3,583,837	-	ggt	b3447	0.42	-0.5
3,583,848	+	ggt	b3447	0.43	+0.0
3,583,848	+	ggt	b3447	0.43	+0.0
3,583,851	-	ggt	b3447	0.43	+0.3
3,583,867	+	ggt	b3447	0.44	-0.0
3,583,872	+	ggt	b3447	0.44	-0.1
3,583,891	-	ggt	b3447	0.45	-0.6
3,583,961	-	ggt	b3447	0.49	-1.8
3,583,981	+	ggt	b3447	0.50	+0.2
3,583,981	+	ggt	b3447	0.50	-0.0
3,583,993	-	ggt	b3447	0.51	-0.2
3,584,026	-	ggt	b3447	0.53	+1.4
3,584,032	+	ggt	b3447	0.53	+0.2
3,584,032	+	ggt	b3447	0.53	+0.3
3,584,042	-	ggt	b3447	0.54	-0.1
3,584,052	-	ggt	b3447	0.54	-0.1
3,584,367	-	ggt	b3447	0.72	-1.1
3,584,403	-	ggt	b3447	0.75	-0.6
3,584,462	-	ggt	b3447	0.78	-0.7
3,584,552	-	ggt	b3447	0.83	-0.4
3,584,574	-	ggt	b3447	0.84	-0.2
3,584,659	+	ggt	b3447	0.89	-0.0
3,584,659	+	ggt	b3447	0.89	+0.1
3,584,701	-				-0.4
3,584,701	-				+0.3
3,584,735	+				+0.3
3,584,735	+				+0.5
3,584,735	+				+0.9
3,584,741	-				-0.4
3,584,804	+				-0.6
3,584,861	+				+0.6
3,584,867	+				+0.2
3,584,874	+				-0.4
3,584,894	-				-2.1
3,584,901	+				+0.4
3,584,901	+				-0.7
3,584,993	+				-0.7
3,585,047	-	yhhA	b3448	0.18	+0.5
3,585,047	-	yhhA	b3448	0.18	+1.0
3,585,069	+	yhhA	b3448	0.23	+1.0
3,585,099	-	yhhA	b3448	0.30	+0.2
3,585,164	-	yhhA	b3448	0.45	-0.9
3,585,166	+	yhhA	b3448	0.45	-0.5
3,585,166	+	yhhA	b3448	0.45	-0.3
3,585,316	+	yhhA	b3448	0.79	-1.1
3,585,366	-				+0.5
3,585,369	-				+0.7
3,585,383	+				-0.4
3,585,431	+				-0.4
3,585,436	+				-0.3
3,585,436	+				+0.0
3,585,436	+				+0.1
3,585,462	-				-1.7
3,585,485	-	ugpQ	b3449	0.12	+0.5
3,585,485	-	ugpQ	b3449	0.12	+0.2
3,585,503	+	ugpQ	b3449	0.15	+0.0
3,585,508	-	ugpQ	b3449	0.15	+0.3
3,585,508	-	ugpQ	b3449	0.15	+0.1
3,585,531	-	ugpQ	b3449	0.19	-0.1
3,585,547	+	ugpQ	b3449	0.21	-1.5
3,585,673	+	ugpQ	b3449	0.38	+0.7
3,585,673	+	ugpQ	b3449	0.38	+1.8
3,585,702	-	ugpQ	b3449	0.42	+0.8
3,585,702	-	ugpQ	b3449	0.42	+0.1
3,585,838	-	ugpQ	b3449	0.60	+0.3
3,585,838	-	ugpQ	b3449	0.60	-1.7